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PDB: 42745 results

1PN8
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BU of 1pn8 by Molmil
Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.
Descriptor: 30S ribosomal protein S12, 50S ribosomal protein L11, E-tRNA
Authors:Valle, M, Zavialov, A, Sengupta, J, Rawat, U, Ehrenberg, M, Frank, J.
Deposit date:2003-06-12
Release date:2003-07-15
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (10.8 Å)
Cite:Locking and Unlocking of Ribosomal Motions
Cell(Cambridge,Mass.), 114, 2003
4PWZ
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BU of 4pwz by Molmil
Crystal structure of TolB protein from Yersinia pestis CO92
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Maltseva, N, Kim, Y, Osipiuk, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-03-21
Release date:2014-04-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.732 Å)
Cite:Crystal structure of TolB protein from Yersinia pestis CO92
To be Published
2IZ1
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BU of 2iz1 by Molmil
6PDH complexed with PEX inhibitor synchrotron data
Descriptor: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, 4-PHOSPHO-D-ERYTHRONOHYDROXAMIC ACID, ...
Authors:Sundaramoorthy, R, Iulek, J, Hunter, W.N.
Deposit date:2006-07-23
Release date:2007-01-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of a Bacterial 6- Phosphogluconate Dehydrogenase Reveal Aspects of Specificity, Mechanism and Mode of Inhibition by Analogues of High-Energy Reaction Intermediates.
FEBS J., 274, 2007
2IZ0
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BU of 2iz0 by Molmil
PEX inhibitor-home data
Descriptor: 1,2-ETHANEDIOL, 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, ...
Authors:Sundaramoorthy, R, Iulek, J, Hunter, W.N.
Deposit date:2006-07-23
Release date:2007-01-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structures of a Bacterial 6- Phosphogluconate Dehydrogenase Reveal Aspects of Specificity, Mechanism and Mode of Inhibition by Analogues of High-Energy Reaction Intermediates.
FEBS J., 274, 2007
4PYQ
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BU of 4pyq by Molmil
Humanized rat apo-COMT in complex with a ureido-benzamidine
Descriptor: 4-({[3-(aminomethyl)phenyl]carbamoyl}amino)benzenecarboximidamide, ACETATE ION, CHLORIDE ION, ...
Authors:Ehler, A, Benz, J, Schlatter, D, Rudolph, M.G.
Deposit date:2014-03-27
Release date:2014-06-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Mapping the conformational space accessible to catechol-O-methyltransferase.
Acta Crystallogr.,Sect.D, 70, 2014
4PVR
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BU of 4pvr by Molmil
Crystal structure of partially-cleaved human l-asparaginase protein in complex with l-aspartate
Descriptor: ASPARTIC ACID, Isoaspartyl peptidase/L-asparaginase, SODIUM ION
Authors:Nomme, J, Lavie, A.
Deposit date:2014-03-18
Release date:2014-03-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structures of apo and product-bound human L-asparaginase: insights into the mechanism of autoproteolysis and substrate hydrolysis.
Biochemistry, 51, 2012
5B60
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BU of 5b60 by Molmil
Crystal structure of PtLCIB4 S47R mutant, a homolog of the limiting CO2-inducible protein LCIB
Descriptor: CHLORIDE ION, PtLCIB4 S47R mutant, ZINC ION
Authors:Jin, S, Sun, J, Wunder, T, Tang, D, Mueller-Caja, O.M, Gao, Y.
Deposit date:2016-05-24
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the LCIB protein family reveals a new group of beta-carbonic anhydrases
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
4PZT
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BU of 4pzt by Molmil
Crystal structure of p300 histone acetyltransferase domain in complex with an inhibitor, Acetonyl-Coenzyme A
Descriptor: DIMETHYL SULFOXIDE, Histone acetyltransferase p300, [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL (3R)-3-HYDROXY-2,2-DIMETHYL-4-OXO-4-{[3-OXO-3-({2-[(2-OXOPROPYL)THIO]ETHYL}AMINO)PROPYL]AMINO}BUTYL DIHYDROGEN DIPHOSPHATE
Authors:Maksimoska, J, Marmorstein, R.
Deposit date:2014-03-31
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the p300 Histone Acetyltransferase Bound to Acetyl-Coenzyme A and Its Analogues.
Biochemistry, 53, 2014
4Q02
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BU of 4q02 by Molmil
Second-site screening of K-Ras in the presence of covalently attached first-site ligands
Descriptor: 3,4-difluorobenzenethiol, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Sun, Q, Phan, J, Friberg, A, Camper, D.V, Olejniczak, E.T, Fesik, S.W.
Deposit date:2014-03-31
Release date:2014-09-10
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:A method for the second-site screening of K-Ras in the presence of a covalently attached first-site ligand.
J.Biomol.Nmr, 60, 2014
7KRI
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BU of 7kri by Molmil
FR6-bound SARS-CoV-2 Nsp9 RNA-replicase
Descriptor: 1,3-dimethyl-1H-pyrrolo[3,4-d]pyrimidine-2,4(3H,6H)-dione, MALONATE ION, Non-structural protein 9, ...
Authors:Littler, D.R, Gully, B.S, Rossjohn, J.
Deposit date:2020-11-20
Release date:2021-07-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Binding of a pyrimidine RNA base-mimic to SARS-CoV-2 nonstructural protein 9.
J.Biol.Chem., 297, 2021
4PXT
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BU of 4pxt by Molmil
Structural basis for the assembly of the mitotic motor kinesin-5 into bipolar tetramers
Descriptor: Bipolar kinesin KRP-130
Authors:Scholey, J.E, Nithianantham, S, Scholey, J.M, Al-Bassam, J.
Deposit date:2014-03-25
Release date:2014-04-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for the assembly of the mitotic motor Kinesin-5 into bipolar tetramers.
Elife, 3, 2014
2J6C
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BU of 2j6c by Molmil
crystal structure of AFV3-109, a highly conserved protein from crenarchaeal viruses
Descriptor: AFV3-109, GLYCEROL
Authors:Keller, J, Leulliot, N, Cambillau, C, Campanacci, V, Porciero, S, Prangishvili, D, Cortez, D, Quevillon-Cheruel, S, Van Tilbeurgh, H.
Deposit date:2006-09-27
Release date:2007-02-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of Afv3-109, a Highly Conserved Protein from Crenarchaeal Viruses.
Virol J., 4, 2007
4PY0
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BU of 4py0 by Molmil
Crystal structure of P2Y12 receptor in complex with 2MeSATP
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-(methylsulfanyl)adenosine 5'-(tetrahydrogen triphosphate), P2Y purinoceptor 12, ...
Authors:Zhang, J, Zhang, K, Gao, Z.G, Paoletta, S, Zhang, D, Han, G.W, Li, T, Ma, L, Zhang, W, Muller, C.E, Yang, H, Jiang, H, Cherezov, V, Katritch, V, Jacobson, K.A, Stevens, R.C, Wu, B, Zhao, Q, GPCR Network (GPCR)
Deposit date:2014-03-25
Release date:2014-04-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Agonist-bound structure of the human P2Y12 receptor
Nature, 509, 2014
4PYJ
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BU of 4pyj by Molmil
human apo-COMT, single domain swap
Descriptor: CHLORIDE ION, Catechol O-methyltransferase, MAGNESIUM ION, ...
Authors:Ehler, A, Benz, J, Schlatter, D, Rudolph, M.G.
Deposit date:2014-03-27
Release date:2014-06-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mapping the conformational space accessible to catechol-O-methyltransferase.
Acta Crystallogr.,Sect.D, 70, 2014
4PYO
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BU of 4pyo by Molmil
Humanized rat COMT bound to SAH, semi-holo form
Descriptor: Catechol O-methyltransferase, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Ehler, A, Benz, J, Schlatter, D, Rudolph, M.G.
Deposit date:2014-03-27
Release date:2014-06-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mapping the conformational space accessible to catechol-O-methyltransferase.
Acta Crystallogr.,Sect.D, 70, 2014
5BOD
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BU of 5bod by Molmil
Crystal structure of Streptococcus pneumonia ParE inhibitor
Descriptor: (2R)-N-[3-(3,5-dimethylphenyl)-1H-pyrazol-5-yl]-1,4-dioxane-2-carboxamide, DNA topoisomerase 4 subunit B
Authors:Tan, Y.W, Chen, G, Hung, A.W, Hill, J.
Deposit date:2015-05-27
Release date:2015-06-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Application of Fragment-based Drug Discovery against DNA GyraseB
to be published
4Q58
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BU of 4q58 by Molmil
Crystal structure of the plectin 1a actin-binding domain/integrin beta 4 fragment complex
Descriptor: Integrin beta-4, Plectin
Authors:Song, J.-G, Kostan, J, Grishkovskaya, I, Djinovic-Carugo, K.
Deposit date:2014-04-16
Release date:2014-07-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4.001 Å)
Cite:Crystal structure of the plectin 1a actin-binding domain/integrin beta 4 fragment complex
To be Published
1XHX
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BU of 1xhx by Molmil
Phi29 DNA Polymerase, orthorhombic crystal form
Descriptor: DNA polymerase, MAGNESIUM ION, SULFATE ION
Authors:Kamtekar, S, Berman, A.J, Wang, J, Lazaro, J.M, de Vega, M, Blanco, L, Salas, M, Steitz, T.A.
Deposit date:2004-09-21
Release date:2004-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Insights into Strand Displacement and Processivity from the Crystal Structure of the Protein-Primed DNA Polymerase of Bacteriophage phi29
Mol.Cell, 16, 2004
4Q5V
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BU of 4q5v by Molmil
Crystal structure of the catalytic core of human DNA polymerase alpha in ternary complex with an RNA-primed DNA template and aphidicolin
Descriptor: (3R,4R,4aR,6aS,8R,9R,11aS,11bS)-4,9-bis(hydroxymethyl)-4,11b-dimethyltetradecahydro-8,11a-methanocyclohepta[a]naphthale ne-3,9-diol, DNA polymerase alpha catalytic subunit, DNA template, ...
Authors:Baranovskiy, A.G, Babayeva, N.D, Suwa, Y, Gu, J, Tahirov, T.H.
Deposit date:2014-04-17
Release date:2014-11-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structural basis for inhibition of DNA replication by aphidicolin.
Nucleic Acids Res., 42, 2014
3RGO
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BU of 3rgo by Molmil
Crystal Structure of PTPMT1
Descriptor: Protein-tyrosine phosphatase mitochondrial 1, SULFATE ION
Authors:Xiao, J, Engel, J.L.
Deposit date:2011-04-08
Release date:2011-07-06
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.928 Å)
Cite:Structural and functional analysis of PTPMT1, a phosphatase required for cardiolipin synthesis.
Proc.Natl.Acad.Sci.USA, 108, 2011
5AXR
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BU of 5axr by Molmil
Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to 2-mercaptoethanesulfonate
Descriptor: 1-THIOETHANESULFONIC ACID, Metallo-beta-lactamase, SODIUM ION, ...
Authors:Wachino, J, Arakawa, Y.
Deposit date:2015-07-31
Release date:2016-05-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to 2-mercaptoethanesulfonate
To Be Published
5AYA
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BU of 5aya by Molmil
Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to L-captopril
Descriptor: L-CAPTOPRIL, Metallo-beta-lactamase, SODIUM ION, ...
Authors:Wachino, J, Arakawa, Y.
Deposit date:2015-08-12
Release date:2016-05-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal Structure of Metallo-beta-Lactamase SMB-1 Bound to L-captopril
To Be Published
4PVS
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BU of 4pvs by Molmil
Crystal structure of fully-cleaved human l-asparaginase protein in complex with l-aspartate
Descriptor: ASPARTIC ACID, Isoaspartyl peptidase/L-asparaginase, SODIUM ION
Authors:Nomme, J, Lavie, A.
Deposit date:2014-03-18
Release date:2014-03-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structures of apo and product-bound human L-asparaginase: insights into the mechanism of autoproteolysis and substrate hydrolysis.
Biochemistry, 51, 2012
7KYP
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BU of 7kyp by Molmil
PsaBC from Streptococcus pneumoniae in complex with Fab
Descriptor: CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE, Manganese ABC transporter, ATP-binding protein, ...
Authors:Maher, M.J, Sjohamn, J.
Deposit date:2020-12-08
Release date:2021-08-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The structural basis of bacterial manganese import.
Sci Adv, 7, 2021
7KYO
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BU of 7kyo by Molmil
PsaBC from Streptococcus pneumoniae in complex with Fab
Descriptor: Fab heavy chain, Fab light chain, Manganese ABC transporter, ...
Authors:Maher, M.J, Sjohamn, J.
Deposit date:2020-12-08
Release date:2021-08-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:The structural basis of bacterial manganese import.
Sci Adv, 7, 2021

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