5XB8
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![BU of 5xb8 by Molmil](/molmil-images/mine/5xb8) | Crystal structure of dibenzothiophene monooxygenase (TdsC) from Paenibacillus sp. A11-2 | 分子名称: | SULFATE ION, Thermophilic dibenzothiophene desulfurization enzyme C | 著者 | Hino, T, Hamamoto, H, Ohshiro, T, Nagano, S. | 登録日 | 2017-03-16 | 公開日 | 2017-08-09 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.795 Å) | 主引用文献 | Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity. J. Biol. Chem., 292, 2017
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5XDD
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![BU of 5xdd by Molmil](/molmil-images/mine/5xdd) | Crystal structure of tertiary complex of TdsC from Paenibacillus sp. A11-2 with FMN and Indole | 分子名称: | FLAVIN MONONUCLEOTIDE, GLYCEROL, INDOLE, ... | 著者 | Hino, T, Hamamoto, H, Ohshiro, T, Nagano, S. | 登録日 | 2017-03-28 | 公開日 | 2017-08-09 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity. J. Biol. Chem., 292, 2017
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5XDB
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![BU of 5xdb by Molmil](/molmil-images/mine/5xdb) | Crystal structure of FMN-bound TdsC from Paenibacillus sp. A11-2 | 分子名称: | FLAVIN MONONUCLEOTIDE, GLYCEROL, SULFATE ION, ... | 著者 | Hino, T, Hamamoto, H, Ohshiro, T, Nagano, S. | 登録日 | 2017-03-28 | 公開日 | 2017-08-09 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.811 Å) | 主引用文献 | Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity. J. Biol. Chem., 292, 2017
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5XDC
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![BU of 5xdc by Molmil](/molmil-images/mine/5xdc) | Crystal structure of Indole-bound TdsC from Paenibacillus sp. A11-2 | 分子名称: | GLYCEROL, INDOLE, SULFATE ION, ... | 著者 | Hino, T, Hamamoto, H, Ohshiro, T, Nagano, S. | 登録日 | 2017-03-28 | 公開日 | 2017-08-09 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.5785 Å) | 主引用文献 | Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity. J. Biol. Chem., 292, 2017
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8J12
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![BU of 8j12 by Molmil](/molmil-images/mine/8j12) | Cryo-EM structure of the AsCas12f-sgRNA-target DNA ternary complex | 分子名称: | DNA (38-MER), MAGNESIUM ION, RNA (247-MER), ... | 著者 | Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O. | 登録日 | 2023-04-12 | 公開日 | 2023-09-27 | 実験手法 | ELECTRON MICROSCOPY (3.08 Å) | 主引用文献 | Minimal and most efficient genome editing Cas enzyme To Be Published
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8J1J
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![BU of 8j1j by Molmil](/molmil-images/mine/8j1j) | Cryo-EM structure of the AsCas12f-YHAM-sgRNAS3-5v7-target DNA | 分子名称: | DNA (38-MER), MAGNESIUM ION, RNA (118-MER), ... | 著者 | Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O. | 登録日 | 2023-04-13 | 公開日 | 2023-09-27 | 実験手法 | ELECTRON MICROSCOPY (2.91 Å) | 主引用文献 | Minimal and most efficient genome editing Cas enzyme To Be Published
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8J3R
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![BU of 8j3r by Molmil](/molmil-images/mine/8j3r) | Cryo-EM structure of the AsCas12f-HKRA-sgRNAS3-5v7-target DNA | 分子名称: | DNA (37-MER), DNA (38-MER), MAGNESIUM ION, ... | 著者 | Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O. | 登録日 | 2023-04-18 | 公開日 | 2023-09-27 | 実験手法 | ELECTRON MICROSCOPY (2.95 Å) | 主引用文献 | Minimal and most efficient genome editing Cas enzyme To Be Published
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3O0R
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![BU of 3o0r by Molmil](/molmil-images/mine/3o0r) | Crystal structure of nitric oxide reductase from Pseudomonas aeruginosa in complex with antibody fragment | 分子名称: | CALCIUM ION, FE (III) ION, HEME C, ... | 著者 | Hino, T, Matsumoto, Y, Nagano, S, Sugimoto, H, Fukumori, Y, Murata, T, Iwata, S, Shiro, Y. | 登録日 | 2010-07-20 | 公開日 | 2010-12-29 | 最終更新日 | 2013-10-16 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Structural basis of biological N2O generation by bacterial nitric oxide reductase Science, 330, 2010
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1VCR
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![BU of 1vcr by Molmil](/molmil-images/mine/1vcr) | An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes | 分子名称: | CHLOROPHYLL A, CHLOROPHYLL B, Chlorophyll a-b binding protein AB80 | 著者 | Hino, T, Kanamori, E, Shen, J.-R, Kouyama, T. | 登録日 | 2004-03-10 | 公開日 | 2004-03-30 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (9.5 Å) | 主引用文献 | An icosahedral assembly of the light-harvesting chlorophyll a/b protein complex from pea chloroplast thylakoid membranes. Acta Crystallogr.,Sect.D, 60, 2004
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4Y4S
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![BU of 4y4s by Molmil](/molmil-images/mine/4y4s) | Crystal Structure of Y75A HasA dimer from Yersinia pseudotuberculosis | 分子名称: | Extracellular heme acquisition hemophore HasA, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION | 著者 | Hino, T, Kanadani, M, Muroki, T, Ishimaru, Y, Wada, Y, Sato, T, Ozaki, S. | 登録日 | 2015-02-11 | 公開日 | 2015-08-12 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | The crystal structure of heme acquisition system A from Yersinia pseudotuberculosis (HasAypt): Roles of the axial ligand Tyr75 and two distal arginines in heme binding J.Inorg.Biochem., 151, 2015
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3VGA
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![BU of 3vga by Molmil](/molmil-images/mine/3vga) | Crystal structure of human adenosine A2A receptor with an allosteric inverse-agonist antibody at 3.1 A resolution | 分子名称: | 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a, antibody fab fragment heavy chain, ... | 著者 | Hino, T, Arakawa, T, Iwanari, H, Yurugi-Kobayashi, T, Ikeda-Suno, C, Nakada-Nakura, Y, Kusano-Arai, O, Weyand, S, Shimamura, T, Nomura, N, Cameron, A.D, Kobayashi, T, Hamakubo, T, Iwata, S, Murata, T. | 登録日 | 2011-08-04 | 公開日 | 2012-02-01 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody Nature, 482, 2012
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3VG9
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![BU of 3vg9 by Molmil](/molmil-images/mine/3vg9) | Crystal structure of human adenosine A2A receptor with an allosteric inverse-agonist antibody at 2.7 A resolution | 分子名称: | 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a, DODECYL-BETA-D-MALTOSIDE, ... | 著者 | Hino, T, Arakawa, T, Iwanari, H, Yurugi-Kobayashi, T, Ikeda-Suno, C, Nakada-Nakura, Y, Kusano-Arai, O, Weyand, S, Shimamura, T, Nomura, N, Cameron, A.D, Kobayashi, T, Hamakubo, T, Iwata, S, Murata, T. | 登録日 | 2011-08-04 | 公開日 | 2012-02-01 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody Nature, 482, 2012
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5XDE
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![BU of 5xde by Molmil](/molmil-images/mine/5xde) | Crystal structure of tertiary complex of TdsC from Paenibacillus sp. A11-2 with FMN and dibenzothiophene | 分子名称: | FLAVIN MONONUCLEOTIDE, GLYCEROL, SULFATE ION, ... | 著者 | Hino, T, Hamamoto, H, Ohshiro, T, Nagano, S. | 登録日 | 2017-03-28 | 公開日 | 2017-08-09 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity. J. Biol. Chem., 292, 2017
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5XDG
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![BU of 5xdg by Molmil](/molmil-images/mine/5xdg) | Crystal structure of tertiary complex of TdsC from Paenibacillus sp. A11-2 with FMN and dibenzothiophene sulfoxide | 分子名称: | FLAVIN MONONUCLEOTIDE, GLYCEROL, SULFATE ION, ... | 著者 | Hino, T, Hamamoto, H, Ohshiro, T, Nagano, S. | 登録日 | 2017-03-28 | 公開日 | 2017-08-09 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.747 Å) | 主引用文献 | Crystal structures of TdsC, a dibenzothiophene monooxygenase from the thermophile Paenibacillus sp. A11-2, reveal potential for expanding its substrate selectivity. J. Biol. Chem., 292, 2017
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5B2G
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![BU of 5b2g by Molmil](/molmil-images/mine/5b2g) | Crystal structure of human claudin-4 in complex with C-terminal fragment of Clostridium perfringens enterotoxin | 分子名称: | Endolysin,Claudin-4, Heat-labile enterotoxin B chain | 著者 | Shinoda, T, Kimura-Someya, T, Shirouzu, M, Yokoyama, S. | 登録日 | 2016-01-15 | 公開日 | 2016-10-05 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | Structural basis for disruption of claudin assembly in tight junctions by an enterotoxin Sci Rep, 6, 2016
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4YTZ
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![BU of 4ytz by Molmil](/molmil-images/mine/4ytz) | Rat xanthine oxidoreductase, C-terminal deletion protein variant, crystal grown without dithiothreitol | 分子名称: | BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ... | 著者 | Nishino, T, Okamoto, K, Kawaguchi, Y, Matsumura, T, Eger, B.T, Pai, E.F, Nishino, T. | 登録日 | 2015-03-18 | 公開日 | 2015-04-22 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | The C-terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase Febs J., 282, 2015
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1WYG
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![BU of 1wyg by Molmil](/molmil-images/mine/1wyg) | Crystal Structure of a Rat Xanthine Dehydrogenase Triple Mutant (C535A, C992R and C1324S) | 分子名称: | 2-HYDROXYBENZOIC ACID, ACETIC ACID, CALCIUM ION, ... | 著者 | Nishino, T, Okamoto, K, Kawaguchi, Y, Hori, H, Matsumura, T, Eger, B.T, Pai, E.F, Nishino, T. | 登録日 | 2005-02-14 | 公開日 | 2005-05-31 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Mechanism of the Conversion of Xanthine Dehydrogenase to Xanthine Oxidase: IDENTIFICATION OF THE TWO CYSTEINE DISULFIDE BONDS AND CRYSTAL STRUCTURE OF A NON-CONVERTIBLE RAT LIVER XANTHINE DEHYDROGENASE MUTANT J.Biol.Chem., 280, 2005
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7DA2
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![BU of 7da2 by Molmil](/molmil-images/mine/7da2) | |
1D8L
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![BU of 1d8l by Molmil](/molmil-images/mine/1d8l) | E. COLI HOLLIDAY JUNCTION BINDING PROTEIN RUVA NH2 REGION LACKING DOMAIN III | 分子名称: | PROTEIN (HOLLIDAY JUNCTION DNA HELICASE RUVA) | 著者 | Nishino, T, Iwasaki, H, Kataoka, M, Ariyoshi, M, Fujita, T, Shinagawa, H, Morikawa, K. | 登録日 | 1999-10-25 | 公開日 | 2000-05-03 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Modulation of RuvB function by the mobile domain III of the Holliday junction recognition protein RuvA. J.Mol.Biol., 298, 2000
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1IPI
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![BU of 1ipi by Molmil](/molmil-images/mine/1ipi) | |
4YTY
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![BU of 4yty by Molmil](/molmil-images/mine/4yty) | Structure of rat xanthine oxidoreductase, C535A/C992R/C1324S, NADH bound form | 分子名称: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, CALCIUM ION, ... | 著者 | Nishino, T, Okamoto, K, Kawaguchi, Y, Matsumura, T, Eger, B.T, Pai, E.F. | 登録日 | 2015-03-18 | 公開日 | 2015-04-22 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | The C-terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase. Febs J., 282, 2015
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4YSW
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![BU of 4ysw by Molmil](/molmil-images/mine/4ysw) | Structure of rat xanthine oxidoreductase, C-terminal deletion protein variant, NADH bound form | 分子名称: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, CALCIUM ION, ... | 著者 | Nishino, T, Okamoto, K, Kawaguchi, Y, Matsumura, T, Eger, B.T, Pai, E.F. | 登録日 | 2015-03-17 | 公開日 | 2015-04-22 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | 主引用文献 | The C-terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase. Febs J., 282, 2015
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1J25
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![BU of 1j25 by Molmil](/molmil-images/mine/1j25) | Crystal structure of archaeal XPF/Mus81 homolog, Hef from Pyrococcus furiosus, nuclease domain, Mn cocrystal | 分子名称: | ATP-dependent RNA helicase, putative, MANGANESE (II) ION | 著者 | Nishino, T, Komori, K, Ishino, Y, Morikawa, K. | 登録日 | 2002-12-25 | 公開日 | 2003-04-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.78 Å) | 主引用文献 | X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes Structure, 11, 2003
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3B0D
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![BU of 3b0d by Molmil](/molmil-images/mine/3b0d) | Crystal structure of the chicken CENP-T histone fold/CENP-W complex, crystal form II | 分子名称: | CITRIC ACID, Centromere protein T, Centromere protein W | 著者 | Nishino, T, Takeuchi, K, Gascoigne, K.E, Suzuki, A, Hori, T, Oyama, T, Morikawa, K, Cheeseman, I.M, Fukagawa, T. | 登録日 | 2011-06-08 | 公開日 | 2012-03-07 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.197 Å) | 主引用文献 | CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold. Cell(Cambridge,Mass.), 148, 2012
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1GEF
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![BU of 1gef by Molmil](/molmil-images/mine/1gef) | Crystal structure of the archaeal holliday junction resolvase HJC | 分子名称: | HOLLIDAY JUNCTION RESOLVASE, SULFATE ION | 著者 | Nishino, T, Komori, K, Tsuchiya, D, Ishino, Y, Morikawa, K. | 登録日 | 2000-11-08 | 公開日 | 2001-03-21 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition. Structure, 9, 2001
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