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PDB: 591 results

7FE5
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BU of 7fe5 by Molmil
AvmM Catalyzes Macrocyclization in Alchivemycin A Biosynthesis
Descriptor: AvmM, CACODYLATE ION, CHLORIDE ION
Authors:Zhang, B, Ge, H.M.
Deposit date:2021-07-19
Release date:2021-09-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:AvmM catalyses macrocyclization through dehydration/Michael-type addition in alchivemycin A biosynthesis.
Nat Commun, 13, 2022
7FE6
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BU of 7fe6 by Molmil
AvmM Catalyzes Macrocyclization in Alchivemycin A Biosynthesis
Descriptor: Alchivemycin A, AvmM, CHLORIDE ION
Authors:Zhang, B, Ge, H.M.
Deposit date:2021-07-19
Release date:2021-09-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:AvmM catalyses macrocyclization through dehydration/Michael-type addition in alchivemycin A biosynthesis.
Nat Commun, 13, 2022
7FE0
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BU of 7fe0 by Molmil
AvmM Catalyzes Macrocyclization in Alchivemycin A Biosynthesis
Descriptor: AvmM, CACODYLATE ION, CHLORIDE ION, ...
Authors:Zhang, B, Ge, H.M.
Deposit date:2021-07-19
Release date:2021-09-01
Last modified:2022-09-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:AvmM catalyses macrocyclization through dehydration/Michael-type addition in alchivemycin A biosynthesis.
Nat Commun, 13, 2022
6JKE
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BU of 6jke by Molmil
Discovery and the crystal structure of NS5 in complex with the N-terminal bromodomain of BRD2.
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 7-chloranyl-2-[(3-chlorophenyl)amino]pyrano[3,4-e][1,3]oxazine-4,5-dione, Bromodomain-containing protein 2, ...
Authors:Padmanabhan, B, Mathur, S, Deshmukh, P.
Deposit date:2019-02-28
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Novel pyrano 1,3 oxazine based ligand inhibits the epigenetic reader hBRD2 in glioblastoma.
Biochem.J., 477, 2020
7C5E
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BU of 7c5e by Molmil
Crystal structure of Keap1 in complex with fumarate (FUM)
Descriptor: ACETATE ION, FUMARIC ACID, Kelch-like ECH-associated protein 1, ...
Authors:Padmanabhan, B, Unni, S, Deshmukh, P.
Deposit date:2020-05-19
Release date:2020-08-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural insights into the multiple binding modes of Dimethyl Fumarate (DMF) and its analogs to the Kelch domain of Keap1.
Febs J., 288, 2021
7C60
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BU of 7c60 by Molmil
Crystal structure of Keap1 in complex with monoethyl fumarate (MEF)
Descriptor: (~{Z})-4-ethoxy-4-oxidanylidene-but-2-enoic acid, ACETATE ION, Kelch-like ECH-associated protein 1, ...
Authors:Padmanabhan, B, Unni, S, Deshmukh, P, Krishnappa, G.
Deposit date:2020-05-21
Release date:2020-08-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural insights into the multiple binding modes of Dimethyl Fumarate (DMF) and its analogs to the Kelch domain of Keap1.
Febs J., 288, 2021
6K1R
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BU of 6k1r by Molmil
Crystal structure of Ketopantoate reductase from Pseudomonas aeruginosa in complex with NAD+ and ketopantoate
Descriptor: GLYCEROL, KETOPANTOATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Khanppnavar, B, Choudhury, A, Datta, S.
Deposit date:2019-05-12
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystallographic and biophysical analyses of Pseudomonas aeruginosa ketopantoate reductase: Implications of ligand induced conformational changes in cofactor recognition.
Biochimie, 2021
2DZE
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BU of 2dze by Molmil
Crystal structure of histone chaperone Asf1 in complex with a C-terminus of histone H3
Descriptor: 10-mer peptide from Histone H3.1/H3.2, Histone chaperone cia1, TRIETHYLENE GLYCOL
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-28
Release date:2007-10-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of histone chaperone Asf1 in complex with a C-terminus of histone H3
To be Published
2ZAD
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BU of 2zad by Molmil
Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8
Descriptor: DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, Muconate cycloisomerase, ...
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-10-03
Release date:2008-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8
To be Published
7YZ9
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BU of 7yz9 by Molmil
Structure of catalytic domain of Rv1625c bound to nanobody NB4
Descriptor: 3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE, Adenylate cyclase, GLYCEROL, ...
Authors:Khanppnavar, B, Mehta, V.J, Iype, T, Korkhov, V.M.
Deposit date:2022-02-19
Release date:2022-08-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structure of Mycobacterium tuberculosis Cya, an evolutionary ancestor of the mammalian membrane adenylyl cyclases.
Elife, 11, 2022
2CU9
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BU of 2cu9 by Molmil
Crystal structure of Histone chaperone cia1
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, Histone chaperone cia1
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-25
Release date:2006-08-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Fission Yeast Histone Chaperone Asf1 Complexed with the Hip1 B-domain or the Cac2 C Terminus
J.Biol.Chem., 283, 2008
4B2D
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BU of 4b2d by Molmil
human PKM2 with L-serine and FBP bound.
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, PYRUVATE KINASE ISOZYMES M1/M2, ...
Authors:Chaneton, B, Hillmann, P, Zheng, L, Martin, A.C.L, Maddocks, O.D.K, Chokkathukalam, A, Coyle, J.E, Jankevics, A, Holding, F.P, Vousden, K.H, Frezza, C, O'Reilly, M, Gottlieb, E.
Deposit date:2012-07-13
Release date:2012-10-10
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Serine is a natural ligand and allosteric activator of pyruvate kinase M2.
Nature, 491, 2012
2ZGI
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BU of 2zgi by Molmil
Crystal Structure of Putative 4-amino-4-deoxychorismate lyase
Descriptor: DI(HYDROXYETHYL)ETHER, PYRIDOXAL-5'-PHOSPHATE, Putative 4-amino-4-deoxychorismate lyase, ...
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-01-22
Release date:2008-07-22
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structure of putative 4-amino-4-deoxychorismate lyase from Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 65, 2009
7ENZ
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BU of 7enz by Molmil
Crystal structure of Phenanthredinone moiety in complex with the second bromodomain of BRD2 (BRD2-BD2).
Descriptor: Bromodomain-containing protein 2, TRIETHYLENE GLYCOL, phenanthridin-6(5H)-one
Authors:Padmanabhan, B, Arole, A, Deshmukh, P, Ashok, S.
Deposit date:2021-04-21
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural investigation of a pyrano-1,3-oxazine derivative and the phenanthridinone core moiety against BRD2 bromodomains.
Acta Crystallogr.,Sect.F, 78, 2022
7ENV
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BU of 7env by Molmil
crystal structure of NS5 in complex with the N-terminal bromodomain of BRD2 (BRD2-BD1).
Descriptor: 7-chloranyl-2-[(3-chlorophenyl)amino]pyrano[3,4-e][1,3]oxazine-4,5-dione, Bromodomain-containing protein 2, SULFATE ION
Authors:Padmanabhan, B, Arole, A, Deshmukh, P, Ashok, S.
Deposit date:2021-04-19
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural investigation of a pyrano-1,3-oxazine derivative and the phenanthridinone core moiety against BRD2 bromodomains.
Acta Crystallogr.,Sect.F, 78, 2022
7EO5
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BU of 7eo5 by Molmil
Crystal structure of pyrano 1,3, oxazine derivative in complex with the second bromodomain of BRD2
Descriptor: 7-chloranyl-2-[(3-chlorophenyl)amino]pyrano[3,4-e][1,3]oxazine-4,5-dione, Bromodomain-containing protein 2, TRIETHYLENE GLYCOL
Authors:Padmanabhan, B, Arole, A, Deshmukh, P, Ashok, S.
Deposit date:2021-04-21
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural investigation of a pyrano-1,3-oxazine derivative and the phenanthridinone core moiety against BRD2 bromodomains.
Acta Crystallogr.,Sect.F, 78, 2022
7ZH6
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BU of 7zh6 by Molmil
Structure of human OCT3 in complex with inhibitor Corticosterone
Descriptor: CORTICOSTERONE, Solute carrier family 22 member 3
Authors:Khanppnavar, B, Korkhov, V.
Deposit date:2022-04-05
Release date:2022-11-09
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Structural basis of organic cation transporter-3 inhibition.
Nat Commun, 13, 2022
7ZHA
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BU of 7zha by Molmil
Structure of human OCT3 in complex with inhibitor decynium-22
Descriptor: 1-ethyl-2-[(1-ethylquinolin-2-yl)methyl]quinoline, Solute carrier family 22 member 3
Authors:Khanppnavar, B, Korkhov, V.
Deposit date:2022-04-05
Release date:2022-11-09
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Structural basis of organic cation transporter-3 inhibition.
Nat Commun, 13, 2022
1G37
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BU of 1g37 by Molmil
CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN COMPLEXED WITH BCH-10556 AND EXOSITE-DIRECTED PEPTIDE
Descriptor: 3-(4-AMINO-CYCLOHEXYL)-2-HYDROXY-3-[(4-OXO-2-PHENYLMETHANESULFONYL-1,2,3,4-TETRAHYDRO-PYRROLO[1,2-A]PYRAZINE-6-CARBONYL)-AMINO]-PROPIONIC ACID BUTYL ESTER, ALPHA THROMBIN, THROMBIN NONAPEPTIDE INHIBITOR
Authors:Bachand, B, Tarazi, M, St-Denis, Y, Edmunds, J.J, Winocour, P.D, Leblond, L, Siddiqui, M.A.
Deposit date:2000-10-23
Release date:2001-04-21
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Potent and selective bicyclic lactam inhibitors of thrombin. Part 4: transition state inhibitors.
Bioorg.Med.Chem.Lett., 11, 2001
2DX8
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BU of 2dx8 by Molmil
Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus
Descriptor: Pygopus homolog 1, ZINC ION
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-24
Release date:2007-05-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus
To be Published
2YXH
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BU of 2yxh by Molmil
Crystal structure of mazG-related protein from Thermotoga maritima
Descriptor: MAGNESIUM ION, MazG-related protein
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of mazG-related protein from Thermotoga maritima
To be Published
2YXG
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BU of 2yxg by Molmil
Crystal structure of Dihyrodipicolinate Synthase (dapA)
Descriptor: Dihydrodipicolinate synthase
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of dihydrodipicolinate synthase from Methanocaldococcus jannaschii.
Acta Crystallogr.,Sect.F, 65, 2009
7EXI
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BU of 7exi by Molmil
Crystal structure of the BTB domain human Keap1
Descriptor: Kelch-like ECH-associated protein 1
Authors:Padmanabhan, B, Deshmukh, P, Gopinath, K, Unni, S.
Deposit date:2021-05-27
Release date:2021-12-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of the BTB domain human Keap1
To Be Published
2YXE
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BU of 2yxe by Molmil
Crystal structure of L-isoaspartyl protein carboxyl methyltranferase
Descriptor: ACETATE ION, Protein-L-isoaspartate O-methyltransferase
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of L-isoaspartyl protein carboxyl methyltranferase
To be Published
2DWW
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BU of 2dww by Molmil
Crystal structure of Bromodomain-containing protein 4
Descriptor: Bromodomain-containing protein 4, CHLORIDE ION
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-21
Release date:2007-08-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Bromodomain-containing protein 4
To be Published

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