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PDB: 22488 件

6T1L
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Crystal structure of MLLT1 (ENL) YEATS domain in complexed with piperazine-urea derivative 3
分子名称: 1,2-ETHANEDIOL, Protein ENL, ~{N}-[[4-(diethylaminomethyl)phenyl]methyl]-4-pyrimidin-2-yl-piperazine-1-carboxamide
著者Chaikuad, A, Heidenreich, D, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Fedorov, O, Knapp, S, Structural Genomics Consortium (SGC)
登録日2019-10-04
公開日2019-11-06
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Insights into Interaction Mechanisms of Alternative Piperazine-urea YEATS Domain Binders in MLLT1.
Acs Med.Chem.Lett., 10, 2019
6T3A
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BU of 6t3a by Molmil
Difference-refined structure of rsEGFP2 10 ns following 400-nm laser irradiation of the off-state determined by SFX
分子名称: Green fluorescent protein
著者Woodhouse, J, Coquelle, N, Adam, V, Barends, T.R.M, De La Mora, E, Bourgeois, D, Colletier, J.P, Schlichting, I, Weik, M.
登録日2019-10-10
公開日2020-02-19
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Photoswitching mechanism of a fluorescent protein revealed by time-resolved crystallography and transient absorption spectroscopy.
Nat Commun, 11, 2020
6TFD
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BU of 6tfd by Molmil
Crystal structure of nitrite and NO bound three-domain copper-containing nitrite reductase from Hyphomicrobium denitrificans strain 1NES1
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, NITRIC OXIDE, ...
著者Sasaki, D, Watanabe, T.F, Eady, R.R, Garratt, R.C, Antonyuk, S.V, Hasnain, S.S.
登録日2019-11-13
公開日2020-06-10
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structures of substrate- and product-bound forms of a multi-domain copper nitrite reductase shed light on the role of domain tethering in protein complexes.
Iucrj, 7, 2020
3FDQ
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BU of 3fdq by Molmil
Recognition of AT-rich DNA binding sites by the MogR Repressor
分子名称: 5'-D(*AP*TP*TP*TP*TP*TP*TP*AP*AP*AP*AP*AP*AP*AP*T)-3', 5'-D(*TP*AP*TP*TP*TP*TP*TP*TP*TP*AP*AP*AP*AP*AP*A)-3', Motility gene repressor mogR
著者Shen, A, Higgins, D.E, Panne, D.
登録日2008-11-26
公開日2009-06-02
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Recognition of AT-Rich DNA Binding Sites by the MogR Repressor.
Structure, 17, 2009
6TL9
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BU of 6tl9 by Molmil
CRYSTAL STRUCTURE OF LECTIN-LIKE OX-LDL RECEPTOR 1 IN COMPLEX WITH BI-0115
分子名称: 9-chloranyl-5-propyl-11~{H}-pyrido[2,3-b][1,4]benzodiazepin-6-one, GLYCEROL, Oxidized low-density lipoprotein receptor 1
著者Nar, H, Fiegen, D, Schnapp, G.
登録日2019-12-02
公開日2020-07-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.734 Å)
主引用文献A small-molecule inhibitor of lectin-like oxidized LDL receptor-1 acts by stabilizing an inactive receptor tetramer state
Commun Chem, 2020
3FFZ
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BU of 3ffz by Molmil
Domain organization in Clostridium butulinum neurotoxin type E is unique: Its implication in faster translocation
分子名称: ACETATE ION, Botulinum neurotoxin type E, SODIUM ION, ...
著者Kumaran, D, Eswaramoorthy, S, Swaminathan, S.
登録日2008-12-04
公開日2008-12-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Domain organization in Clostridium botulinum neurotoxin type E is unique: its implication in faster translocation.
J.Mol.Biol., 386, 2009
6UZQ
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BU of 6uzq by Molmil
HLA-B*15:01 complexed with a synthetic peptide
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Beta-2-microglobulin, ...
著者Schutte, R.J, Li, D, Ostrov, D.A.
登録日2019-11-15
公開日2020-11-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.395 Å)
主引用文献HLA-B*15:01 complexed with a synthetic peptide
To Be Published
3F1T
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BU of 3f1t by Molmil
Crystal structure of the Q9I3C8_PSEAE protein from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium target PaR319a.
分子名称: MAGNESIUM ION, uncharacterized protein Q9I3C8_PSEAE
著者Vorobiev, S.M, Chen, Y, Abashidze, M, Seetharaman, J, Wang, D, Foote, E.L, Ciccosanti, C, Mao, L, Xiao, R, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2008-10-28
公開日2008-11-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the Q9I3C8_PSEAE protein from Pseudomonas aeruginosa.
To be Published
3F6B
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BU of 3f6b by Molmil
Crystal structure of benzoylformate decarboxylase in complex with the pyridyl inhibitor PAA
分子名称: 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2-[(1S,2E)-1-hydroxy-3-pyridin-3-ylprop-2-en-1-yl]-4-methyl-1,3-thiazol-3-ium, Benzoylformate decarboxylase, MAGNESIUM ION
著者Brandt, G.S, McLeish, M.J, Kenyon, G.L, Petsko, G.A, Ringe, D, Jordan, F.
登録日2008-11-05
公開日2008-12-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Detection and time course of formation of major thiamin diphosphate-bound covalent intermediates derived from a chromophoric substrate analogue on benzoylformate decarboxylase.
Biochemistry, 48, 2009
3FA2
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BU of 3fa2 by Molmil
Crystal Structure of the BRCA1 Associated Ring Domain (BARD1) Tandem BRCT Domains
分子名称: BRCA1-associated RING domain protein 1, GLYCEROL, PHOSPHATE ION
著者Fox III, D, Le Trong, I, Stenkamp, R.E, Klevit, R.E.
登録日2008-11-14
公開日2008-12-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of the BRCA1 Associated Ring Domain (BARD1) Tandem BRCT Domains
TO BE PUBLISHED
6VA0
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BU of 6va0 by Molmil
Crystal structure of glucose-6-phosphate dehydrogenase W509A mutant in complex with catalytic NADP+
分子名称: Glucose-6-phosphate 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Horikoshi, N, Mochly-Rosen, D, Wakatsuki, S.
登録日2019-12-16
公開日2021-01-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Long-range structural defects by pathogenic mutations in most severe glucose-6-phosphate dehydrogenase deficiency.
Proc.Natl.Acad.Sci.USA, 118, 2021
3GTK
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BU of 3gtk by Molmil
Backtracked RNA polymerase II complex with 18mer RNA
分子名称: DNA (29-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ...
著者Wang, D, Bushnell, D.A, Huang, X, Westover, K.D, Levitt, M, Kornberg, R.D.
登録日2009-03-27
公開日2009-06-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution.
Science, 324, 2009
6V9W
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BU of 6v9w by Molmil
Structure of TRPA1 (ligand-free) with bound calcium, LMNG
分子名称: CALCIUM ION, Transient receptor potential cation channel subfamily A member 1
著者Zhao, J, Lin King, J.V, Paulsen, C.E, Cheng, Y, Julius, D.
登録日2019-12-16
公開日2020-05-06
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Irritant-evoked activation and calcium modulation of the TRPA1 receptor.
Nature, 585, 2020
3H2B
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BU of 3h2b by Molmil
Crystal structure of the SAM-dependent methyltransferase cg3271 from Corynebacterium glutamicum in complex with S-adenosyl-L-homocysteine and pyrophosphate. Northeast Structural Genomics Consortium Target CgR113A
分子名称: PYROPHOSPHATE, S-ADENOSYL-L-HOMOCYSTEINE, SAM-dependent methyltransferase
著者Forouhar, F, Lew, S, Seetharaman, J, Sahdev, S, Xiao, R, Foote, E.L, Ciccosanti, C, Wang, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2009-04-14
公開日2009-04-28
最終更新日2019-07-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Northeast Structural Genomics Consortium Target CgR113A
To be published
6VB1
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BU of 6vb1 by Molmil
HLA-B*15:02 complexed with a synthetic peptide
分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, GLYCEROL, ...
著者Schutte, R.J, Li, D, Andring, J, McKenna, R, Ostrov, D.A.
登録日2019-12-18
公開日2020-11-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献HLA-B*15:02 complexed with a synthetic peptide
To Be Published
3H0M
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BU of 3h0m by Molmil
Structure of trna-dependent amidotransferase gatcab from aquifex aeolicus
分子名称: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GLUTAMINE, Glutamyl-tRNA(Gln) amidotransferase subunit A, ...
著者Wu, J, Bu, W, Sheppard, K, Kitabatake, M, Soll, D, Smith, J.L.
登録日2009-04-09
公開日2009-07-21
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Insights into tRNA-Dependent Amidotransferase Evolution and Catalysis from the Structure of the Aquifex aeolicus Enzyme
J.Mol.Biol., 391, 2009
6VB7
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BU of 6vb7 by Molmil
HLA-B*15:02 complexed with a synthetic peptide
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Beta-2-microglobulin, ...
著者Schutte, R.J, Li, D, Ostrov, D.A.
登録日2019-12-18
公開日2020-11-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献HLA-B*15:02 complexed with a synthetic peptide
To Be Published
6VB6
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BU of 6vb6 by Molmil
HLA-B*15:02 complexed with a synthetic peptide
分子名称: ACETATE ION, Beta-2-microglobulin, GLYCEROL, ...
著者Schutte, R.J, Li, D, Ostrov, D.A.
登録日2019-12-18
公開日2020-11-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献HLA-B*15:02 complexed with a synthetic peptide
To Be Published
6VCB
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BU of 6vcb by Molmil
Cryo-EM structure of the Glucagon-like peptide-1 receptor in complex with G protein, GLP-1 peptide and a positive allosteric modulator
分子名称: 1-[(1R)-1-(2,6-dichloro-3-methoxyphenyl)ethyl]-6-{2-[(2R)-piperidin-2-yl]phenyl}-1H-benzimidazole, Glucagon-like peptide 1, Glucagon-like peptide 1 receptor, ...
著者Sun, B, Feng, D, Bueno, A, Kobilka, B, Sloop, K.
登録日2019-12-20
公開日2020-07-22
最終更新日2020-09-30
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural insights into probe-dependent positive allosterism of the GLP-1 receptor.
Nat.Chem.Biol., 16, 2020
3H6Q
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Macrocypin, a beta-trefoil cysteine protease inhibitor
分子名称: Macrocypin 1a
著者Renko, M, Sabotic, J, Brzin, J, Turk, D.
登録日2009-04-23
公開日2009-10-20
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.643 Å)
主引用文献Versatile loops in mycocypins inhibit three protease families.
J.Biol.Chem., 285, 2010
3HAR
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BU of 3har by Molmil
Crystal structure of bacteriorhodopsin mutant I148V crystallized from bicelles
分子名称: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Bacteriorhodopsin, RETINAL
著者Joh, N.H, Yang, D, Bowie, J.U.
登録日2009-05-02
公開日2009-09-22
最終更新日2021-10-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Similar energetic contributions of packing in the core of membrane and water-soluble proteins.
J.Am.Chem.Soc., 131, 2009
3HC4
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BU of 3hc4 by Molmil
BHA10 IgG1 Fab quadruple mutant variant - antibody directed at human LTBR
分子名称: ACETATE ION, IMMUNOGLOBULIN IGG1 FAB, HEAVY CHAIN, ...
著者Arndt, J.W, Jordan, J.L, Lugovskoy, A, Wang, D.
登録日2009-05-05
公開日2009-08-04
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Structural understanding of stabilization patterns in engineered bispecific Ig-like antibody molecules
Proteins, 77, 2009
6VBA
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Structure of human Uracil DNA Glycosylase (UDG) bound to Aurintricarboxylic acid (ATA)
分子名称: 3,3'-[(3-carboxy-4-oxocyclohexa-2,5-dien-1-ylidene)methylene]bis(6-hydroxybenzoic acid), Uracil-DNA glycosylase
著者Moiani, D, Arvai, A.S, Tainer, J.A.
登録日2019-12-18
公開日2021-03-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献An effective human uracil-DNA glycosylase inhibitor targets the open pre-catalytic active site conformation.
Prog.Biophys.Mol.Biol., 163, 2021
3GLX
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BU of 3glx by Molmil
Crystal Structure Analysis of the DtxR(E175K) complexed with Ni(II)
分子名称: Diphtheria toxin repressor, NICKEL (II) ION, PHOSPHATE ION
著者D'Aquino, J.A, Denninger, A, Moulin, A, D'Aquino, K.E, Ringe, D.
登録日2009-03-12
公開日2009-06-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Decreased sensitivity to changes in the concentration of metal ions as the basis for the hyperactivity of DtxR(E175K).
J.Mol.Biol., 390, 2009
3GNF
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BU of 3gnf by Molmil
P1 Crystal structure of the N-terminal R1-R7 of murine MVP
分子名称: Major vault protein
著者Querol-Audi, J, Casanas, A, Uson, I, Luque, D, Caston, J.R, Fita, I, Verdaguer, N.
登録日2009-03-17
公開日2009-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The mechanism of vault opening from the high resolution structure of the N-terminal repeats of MVP
Embo J., 28, 2009

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