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PDB: 22488 results

2OMM
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BU of 2omm by Molmil
GNNQQNY peptide corresponding to residues 7-13 of yeast prion sup35
Descriptor: GNNQQNY peptide corresponding to residues 7-13 of yeast prion sup35
Authors:Sawaya, M.R, Nelson, R, Eisenberg, D.
Deposit date:2007-01-22
Release date:2007-01-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Atomic structures of amyloid cross-beta spines reveal varied steric zippers.
Nature, 447, 2007
1RD5
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BU of 1rd5 by Molmil
Crystal structure of Tryptophan synthase alpha chain homolog BX1: a member of the chemical plant defense system
Descriptor: MALONIC ACID, Tryptophan synthase alpha chain, chloroplast
Authors:Kulik, V, Hartmann, E, Weyand, M, Frey, M, Gierl, A, Niks, D, Dunn, M.F, Schlichting, I.
Deposit date:2003-11-05
Release date:2004-12-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:On the structural basis of the catalytic mechanism and the regulation of the alpha subunit of tryptophan synthase from Salmonella typhimurium and BX1 from maize, two evolutionarily related enzymes.
J.Mol.Biol., 352, 2005
1R6C
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BU of 1r6c by Molmil
High resolution structure of ClpN
Descriptor: ATP-dependent Clp protease ATP-binding subunit clpA
Authors:Xia, D, Maurizi, M.R, Guo, F, Singh, S.K, Esser, L.
Deposit date:2003-10-15
Release date:2005-02-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystallographic investigation of peptide binding sites in the N-domain of the ClpA chaperone
J.Struct.Biol., 146, 2004
5NX7
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BU of 5nx7 by Molmil
Crystal structure of 1,8-cineole synthase from Streptomyces clavuligerus in complex with 2-fluoroneryl diphosphate and 2-fluorogeranyl diphosphate
Descriptor: (2E)-2-fluoro-3,7-dimethylocta-2,6-dien-1-yl trihydrogen diphosphate, (2Z)-2-fluoro-3,7-dimethylocta-2,6-dien-1-yl trihydrogen diphosphate, 2-ethyl-2-(hydroxymethyl)propane-1,3-diol, ...
Authors:Karuppiah, V, Leys, D, Scrutton, N.S.
Deposit date:2017-05-09
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Structural Basis of Catalysis in the Bacterial Monoterpene Synthases Linalool Synthase and 1,8-Cineole Synthase.
ACS Catal, 7, 2017
2Q6U
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BU of 2q6u by Molmil
SeMet-substituted form of NikD
Descriptor: BENZOIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, NikD protein
Authors:Carrell, C.J, Bruckner, R.C, Venci, D, Zhao, G, Jorns, M.S, Mathews, F.S.
Deposit date:2007-06-05
Release date:2007-07-31
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:NikD, an Unusual Amino Acid Oxidase Essential for Nikkomycin Biosynthesis: Structures of Closed and Open Forms at 1.15 and 1.90 A Resolution
Structure, 15, 2007
2Q7Q
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BU of 2q7q by Molmil
Crystal structure of Alcaligenes faecalis AADH in complex with p-chlorobenzylamine.
Descriptor: 1-(4-CHLOROPHENYL)METHANAMINE, Aralkylamine dehydrogenase heavy chain, Aralkylamine dehydrogenase light chain
Authors:Roujeinikova, A, Leys, D.
Deposit date:2007-06-07
Release date:2007-07-31
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of the quinoprotein mechanism for aromatic amine dehydrogenase.
Biochemistry, 46, 2007
4NCO
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BU of 4nco by Molmil
Crystal Structure of the BG505 SOSIP gp140 HIV-1 Env trimer in Complex with the Broadly Neutralizing Fab PGT122
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BG505 SOSIP gp120, BG505 SOSIP gp41, ...
Authors:Julien, J.-P, Stanfield, R.L, Lyumkis, D, Ward, A.B, Wilson, I.A.
Deposit date:2013-10-24
Release date:2013-11-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (4.7 Å)
Cite:Crystal structure of a soluble cleaved HIV-1 envelope trimer.
Science, 342, 2013
3HV3
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BU of 3hv3 by Molmil
Human p38 MAP Kinase in Complex with RL49
Descriptor: 1-{4-[(6-aminoquinolin-4-yl)amino]phenyl}-3-[3-tert-butyl-1-(3-methylphenyl)-1H-pyrazol-5-yl]urea, GLYCEROL, Mitogen-activated protein kinase 14, ...
Authors:Gruetter, C, Simard, J.R, Getlik, M, Rauh, D.
Deposit date:2009-06-15
Release date:2009-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Displacement assay for the detection of stabilizers of inactive kinase conformations.
J.Med.Chem., 53, 2010
1RFD
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BU of 1rfd by Molmil
ANTI-COCAINE ANTIBODY M82G2
Descriptor: Fab M82G2, Heavy Chain, Light Chain
Authors:Pozharski, E, Hewagama, A, Shanafelt, A.B, Petsko, G.A, Ringe, D.
Deposit date:2003-11-07
Release date:2003-11-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Diversity in hapten recognition: structural study of an anti-cocaine antibody M82G2.
J.Mol.Biol., 349, 2005
3I31
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BU of 3i31 by Molmil
Hera helicase RNA binding domain is an RRM fold
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Heat resistant RNA dependent ATPase, SODIUM ION, ...
Authors:Rudolph, M.G, Klostermeier, D.
Deposit date:2009-06-30
Release date:2009-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Thermus thermophilus DEAD box helicase Hera contains a modified RNA recognition motif domain loosely connected to the helicase core.
Rna, 15, 2009
1RFL
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BU of 1rfl by Molmil
NMR data driven structural model of G-domain of MnmE protein
Descriptor: Probable tRNA modification GTPase trmE
Authors:Monleon, D, Esteve, V, Martinez-Vicente, M, Yim, L, Armengod, M.E, Celda, B.
Deposit date:2003-11-10
Release date:2003-12-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural insights into the GTPase domain of Escherichia coli MnmE protein.
Proteins, 66, 2007
2QA1
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BU of 2qa1 by Molmil
Crystal structure of PgaE, an aromatic hydroxylase involved in angucycline biosynthesis
Descriptor: 1,2-ETHANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Koskiniemi, H, Dobritzsch, D, Metsa-Ketela, M, Kallio, P, Niemi, J, Schneider, G.
Deposit date:2007-06-14
Release date:2007-08-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of two aromatic hydroxylases involved in the early tailoring steps of angucycline biosynthesis
J.Mol.Biol., 372, 2007
3HOU
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BU of 3hou by Molmil
Complete RNA polymerase II elongation complex I with a T-U mismatch
Descriptor: 5'-D(*A*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*CP*A*AP*GP*TP*AP*GP*TP*TP*AP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*U*UP*CP*GP*AP*CP*CP*AP*GP*GP*CP*U)-3', ...
Authors:Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P.
Deposit date:2009-06-03
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA.
Mol.Cell, 34, 2009
1RO8
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BU of 1ro8 by Molmil
Structural analysis of the sialyltransferase CstII from Campylobacter jejuni in complex with a substrate analogue, cytidine-5'-monophosphate
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, alpha-2,3/8-sialyltransferase
Authors:Chiu, C.P, Watts, A.G, Lairson, L.L, Gilbert, M, Lim, D, Wakarchuk, W.W, Withers, S.G, Strynadka, N.C.
Deposit date:2003-12-01
Release date:2004-02-03
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural analysis of the sialyltransferase CstII from Campylobacter jejuni in complex with a substrate analog.
Nat.Struct.Mol.Biol., 11, 2004
3HOZ
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BU of 3hoz by Molmil
Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanine
Descriptor: 5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*C*AP*AP*GP*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*U*CP*AP*AP*CP*CP*AP*GP*GP*CP*UP*G)-3', ...
Authors:Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P.
Deposit date:2009-06-03
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA.
Mol.Cell, 34, 2009
5O61
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BU of 5o61 by Molmil
The complete structure of the Mycobacterium smegmatis 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Hentschel, J, Burnside, C, Mignot, I, Leibundgut, M, Boehringer, D, Ban, N.
Deposit date:2017-06-03
Release date:2017-07-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.31 Å)
Cite:The Complete Structure of the Mycobacterium smegmatis 70S Ribosome.
Cell Rep, 20, 2017
6IAR
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BU of 6iar by Molmil
Tricyclic indazoles a novel class of selective estrogen receptor degrader antagonists
Descriptor: 3-[4-[(6~{R})-7-(2-methylpropyl)-3,6,8,9-tetrahydropyrazolo[4,3-f]isoquinolin-6-yl]phenyl]propanoic acid, Estrogen receptor
Authors:Scott, J.S, Bailey, A, Buttar, D, Carbajo, R.J, Curwen, J, Davies, R.D.M, Degorce, S.L, Donald, C, Gangl, E, Greenwood, R, Groombridge, S.D, Johnson, T, Lamont, S, Lawson, M, Lister, A, Morrow, C, Moss, T, Pink, J.H, Polanski, R.
Deposit date:2018-11-27
Release date:2019-01-23
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Tricyclic Indazoles-A Novel Class of Selective Estrogen Receptor Degrader Antagonists.
J.Med.Chem., 62, 2019
3HUC
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BU of 3huc by Molmil
Human p38 MAP Kinase in Complex with RL40
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Mitogen-activated protein kinase 14, N-[2-phenyl-4-(1H-pyrazol-3-ylamino)quinazolin-7-yl]prop-2-enamide, ...
Authors:Gruetter, C, Simard, J.R, Getlik, M, Rauh, D.
Deposit date:2009-06-13
Release date:2010-03-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fluorophore labeling of the glycine-rich loop as a method of identifying inhibitors that bind to active and inactive kinase conformations.
J.Am.Chem.Soc., 132, 2010
5OC6
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BU of 5oc6 by Molmil
Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD in complex with a 22 nucleotide dsRNA
Descriptor: RNA, tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
Authors:Bou-nader, C, Pecqueur, L, Hamdane, D.
Deposit date:2017-06-29
Release date:2018-12-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2.
Nucleic Acids Res., 47, 2019
8T2B
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BU of 8t2b by Molmil
Crystal structure of SCV PTE G18C mutant RNA in complex with Fab BL3-6
Descriptor: BL3-6 Fab heavy chain, BL3-6 Fab light chain, RNA (90-MER)
Authors:Ojha, M, Koirala, D.
Deposit date:2023-06-05
Release date:2024-01-10
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Structure of saguaro cactus virus 3' translational enhancer mimics 5' cap for eIF4E binding.
Proc.Natl.Acad.Sci.USA, 121, 2024
3HV7
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BU of 3hv7 by Molmil
Human p38 MAP Kinase in Complex with RL38
Descriptor: 1-[1-(3-aminophenyl)-3-tert-butyl-1H-pyrazol-5-yl]-3-naphthalen-1-ylurea, Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Gruetter, C, Simard, J.R, Getlik, M, Rauh, D.
Deposit date:2009-06-15
Release date:2009-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Displacement assay for the detection of stabilizers of inactive kinase conformations.
J.Med.Chem., 53, 2010
6IB0
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BU of 6ib0 by Molmil
The structure of MKK7 in complex with the covalent 4-amino-pyrazolopyrimidine 3a
Descriptor: 1-[(3~{R})-3-(4-azanyl-3-ethynyl-pyrazolo[3,4-d]pyrimidin-1-yl)piperidin-1-yl]prop-2-en-1-one, Dual specificity mitogen-activated protein kinase kinase 7, TETRAETHYLENE GLYCOL
Authors:Wolle, P, Hardick, J, Mueller, M.P, Rauh, D.
Deposit date:2018-11-28
Release date:2019-02-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Targeting the MKK7-JNK (Mitogen-Activated Protein Kinase Kinase 7-c-Jun N-Terminal Kinase) Pathway with Covalent Inhibitors.
J.Med.Chem., 62, 2019
8T2A
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BU of 8t2a by Molmil
Crystal structure of SCV PTE G18A mutant RNA in complex with Fab BL3-6
Descriptor: BL3-6 Fab heavy chain, BL3-6 Fab light chain, RNA (90-MER)
Authors:Ojha, M, Koirala, D.
Deposit date:2023-06-05
Release date:2024-01-10
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structure of saguaro cactus virus 3' translational enhancer mimics 5' cap for eIF4E binding.
Proc.Natl.Acad.Sci.USA, 121, 2024
8T7E
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BU of 8t7e by Molmil
Cryo-EM structure of the Backtracking Initiation Complex (VII) of Human Mitochondrial DNA Polymerase Gamma
Descriptor: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ...
Authors:Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D.
Deposit date:2023-06-20
Release date:2024-01-10
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structural basis for DNA proofreading.
Nat Commun, 14, 2023
2QA2
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Crystal structure of CabE, an aromatic hydroxylase from angucycline biosynthesis, determined to 2.7 A resolution
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Polyketide oxygenase CabE
Authors:Koskiniemi, H, Dobritzsch, D, Metsa-Ketela, M, Kallio, P, Niemi, J, Schneider, G.
Deposit date:2007-06-14
Release date:2007-08-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of two aromatic hydroxylases involved in the early tailoring steps of angucycline biosynthesis
J.Mol.Biol., 372, 2007

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