Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 625 件

5Y3C
DownloadVisualize
BU of 5y3c by Molmil
Crystal structure of zebrafish Ccd1 DIX domain
分子名称: Dixin-A
著者Terawaki, S, Shibata, N, Higuchi, Y.
登録日2017-07-28
公開日2017-09-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structural basis for Ccd1 auto-inhibition in the Wnt pathway through homomerization of the DIX domain.
Sci Rep, 7, 2017
5Y3B
DownloadVisualize
BU of 5y3b by Molmil
Crystal structure of mouse Ccd1 DIX domain
分子名称: Dixin
著者Terawaki, S, Shibata, N, Higuchi, Y.
登録日2017-07-28
公開日2017-09-06
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for Ccd1 auto-inhibition in the Wnt pathway through homomerization of the DIX domain.
Sci Rep, 7, 2017
2N37
DownloadVisualize
BU of 2n37 by Molmil
Solution structure of AVR-Pia
分子名称: AVR-Pia protein
著者Ose, T, Oikawa, A, Nakamura, Y, Maenaka, K, Higuchi, Y, Satoh, Y, Fujiwara, S, Demura, M, Sone, T.
登録日2015-05-25
公開日2015-10-14
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution structure of an avirulence protein, AVR-Pia, from Magnaporthe oryzae
J.Biomol.Nmr, 63, 2015
3LZX
DownloadVisualize
BU of 3lzx by Molmil
Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase 2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Komori, H, Seo, D, Sakurai, T, Higuchi, Y.
登録日2010-03-02
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity
Protein Sci., 19, 2010
6ABU
DownloadVisualize
BU of 6abu by Molmil
Rat Xanthine oxidoreductase, NAD bound form
分子名称: BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Okamoto, K, Kawaguchi, Y.
登録日2018-07-24
公開日2019-07-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Rat Xanthine oxidoreductase, NAD bound form
To Be Published
3LZW
DownloadVisualize
BU of 3lzw by Molmil
Crystal structure of ferredoxin-NADP+ oxidoreductase from bacillus subtilis (form I)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase 2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Komori, H, Seo, D, Sakurai, T, Higuchi, Y.
登録日2010-03-02
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity
Protein Sci., 19, 2010
4E9Y
DownloadVisualize
BU of 4e9y by Molmil
Multicopper Oxidase mgLAC (data4)
分子名称: CHLORIDE ION, COPPER (II) ION, Multicopper oxidase, ...
著者Komori, H, Miyazaki, K, Higuchi, Y.
登録日2012-03-21
公開日2013-03-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献New insights into the catalytic active-site structure of multicopper oxidases.
Acta Crystallogr.,Sect.D, 70, 2014
3AN1
DownloadVisualize
BU of 3an1 by Molmil
Crystal structure of rat D428A mutant, urate bound form
分子名称: BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
著者Okamoto, K, Kawaguchi, Y, Eger, B.T, Pai, E.F, Nishino, T.
登録日2010-08-27
公開日2010-12-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate
J.Am.Chem.Soc., 132, 2010
2EBF
DownloadVisualize
BU of 2ebf by Molmil
Crystal structures reveal a thiol-protease like catalytic triad in the C-terminal region of Pasteurella multocida toxin
分子名称: Dermonecrotic toxin, PHOSPHONATE, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Kitadokoro, K, Horiguchi, Y, Kamitani, S.
登録日2007-02-08
公開日2007-03-06
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures reveal a thiol protease-like catalytic triad in the C-terminal region of Pasteurella multocida toxin
Proc.Natl.Acad.Sci.Usa, 104, 2007
4O5Y
DownloadVisualize
BU of 4o5y by Molmil
O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine
分子名称: BARIUM ION, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), POTASSIUM ION
著者Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A.
登録日2013-12-20
公開日2014-07-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine
Acta Crystallogr.,Sect.D, 70, 2014
3AT8
DownloadVisualize
BU of 3at8 by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM barium chloride)
分子名称: BARIUM ION, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3ATD
DownloadVisualize
BU of 3atd by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM Gadolinium chloride and 10 mM magnesium chloride)
分子名称: GADOLINIUM ATOM, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3ATA
DownloadVisualize
BU of 3ata by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM barium chloride and 10 mM Spermine)
分子名称: BARIUM ION, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.49 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
5XFI
DownloadVisualize
BU of 5xfi by Molmil
Crystal structure of Calsepa lectin in complex with biantennary N-glycan
分子名称: 1,2-ETHANEDIOL, BENZOIC ACID, Lectin, ...
著者Nagae, M, Yamaguchi, Y.
登録日2017-04-10
公開日2017-10-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.653 Å)
主引用文献Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa.
Glycobiology, 27, 2017
3ATE
DownloadVisualize
BU of 3ate by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM praseodymium (III) acetate)
分子名称: PRASEODYMIUM ION, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
5XFH
DownloadVisualize
BU of 5xfh by Molmil
Crystal structure of Orysata lectin in complex with biantennary N-glycan
分子名称: Salt stress-induced protein, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose
著者Nagae, M, Yamaguchi, Y.
登録日2017-04-10
公開日2017-10-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.903 Å)
主引用文献Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa.
Glycobiology, 27, 2017
2EBH
DownloadVisualize
BU of 2ebh by Molmil
Crystal structures reveal a thiol-protease like catalytic triad in the C-terminal region of Pasteurella multocida toxin
分子名称: Dermonecrotic toxin, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Kitadokoro, K, Horiguchi, Y, Kamitani, S.
登録日2007-02-08
公開日2007-03-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures reveal a thiol protease-like catalytic triad in the C-terminal region of Pasteurella multocida toxin
Proc.Natl.Acad.Sci.Usa, 104, 2007
3P1P
DownloadVisualize
BU of 3p1p by Molmil
Crystal structure of human 14-3-3 sigma C38N/N166H in complex with TASK-3 peptide
分子名称: 14-3-3 protein sigma, 6-mer peptide from Potassium channel subfamily K member 9, CHLORIDE ION, ...
著者Anders, C, Higuchi, Y, Schumacher, B, Thiel, P, Kato, N, Ottmann, C.
登録日2010-09-30
公開日2011-10-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献A semisynthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of K+ channels at the cell surface
Chem. Biol., 20, 2013
3P1Q
DownloadVisualize
BU of 3p1q by Molmil
Crystal structure of human 14-3-3 sigma C38N/N166H in complex with TASK-3 Peptide and stabilizer fusicoccin A
分子名称: 14-3-3 protein sigma, 6-mer peptide from Potassium channel subfamily K member 9, CALCIUM ION, ...
著者Anders, C, Higuchi, Y, Schumacher, B, Thiel, P, Kato, N, Ottmann, C.
登録日2010-09-30
公開日2011-10-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A semisynthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of K+ channels at the cell surface
Chem. Biol., 20, 2013
3P1O
DownloadVisualize
BU of 3p1o by Molmil
Crystal structure of human 14-3-3 sigma in complex with TASK-3 peptide and stabilisator Fusicoccin A
分子名称: 14-3-3 protein sigma, 6-mer peptide from Potassium channel subfamily K member 9, CALCIUM ION, ...
著者Anders, C, Higuchi, Y, Schumacher, B, Thiel, P, Kato, N, Ottmann, C.
登録日2010-09-30
公開日2011-10-12
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A semisynthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of K+ channels at the cell surface
Chem. Biol., 20, 2013
3P1N
DownloadVisualize
BU of 3p1n by Molmil
Crystal structure of human 14-3-3 sigma in complex with TASK-3 peptide
分子名称: 14-3-3 protein sigma, 6-mer peptide from Potassium channel subfamily K member 9, CHLORIDE ION, ...
著者Anders, C, Higuchi, Y, Schumacher, B, Thiel, P, Kato, N, Ottmann, C.
登録日2010-09-30
公開日2011-10-12
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献A semisynthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of K+ channels at the cell surface
Chem. Biol., 20, 2013
5YHS
DownloadVisualize
BU of 5yhs by Molmil
Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, apo form
分子名称: Pyruvylated beta-D-galactosidase
著者Tanuma, M, Yamada, C, Arakawa, T, Higuchi, Y, Takegawa, K, Fushinobu, S.
登録日2017-09-29
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose.
Sci Rep, 8, 2018
5YOT
DownloadVisualize
BU of 5yot by Molmil
Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Matsuzawa, T, Watanabe, M, Nakamichi, Y, Yaoi, K.
登録日2017-10-31
公開日2018-11-07
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Crystal structure and substrate recognition mechanism of Aspergillus oryzae isoprimeverose-producing enzyme.
J.Struct.Biol., 205, 2019
5YIF
DownloadVisualize
BU of 5yif by Molmil
Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, E163A mutant pyruvylated beta-D-galactose complex
分子名称: (2R,4aR,6R,7R,8R,8aR)-2-methyl-6,7,8-tris(oxidanyl)-4,4a,6,7,8,8a-hexahydropyrano[3,2-d][1,3]dioxine-2-carboxylic acid, Pyruvylated beta-D-galactosidase
著者Tanuma, M, Yamada, C, Arakawa, T, Higuchi, Y, Takegawa, K, Fushinobu, S.
登録日2017-10-04
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose.
Sci Rep, 8, 2018
5YQS
DownloadVisualize
BU of 5yqs by Molmil
Isoprimeverose-producing enzyme from Aspergillus oryzae in complex with isoprimeverose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Yaoi, K, Matsuzawa, T, Watanabe, M, Nakamichi, Y.
登録日2017-11-07
公開日2018-11-14
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure and substrate recognition mechanism of Aspergillus oryzae isoprimeverose-producing enzyme.
J.Struct.Biol., 205, 2019

224201

件を2024-08-28に公開中

PDB statisticsPDBj update infoContact PDBjnumon