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PDB: 1500 results

2VAL
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BU of 2val by Molmil
Crystal structure of an Escherichia coli tRNAGly microhelix at 2.0 Angstrom resolution
Descriptor: 5'-R(*GP*CP*GP*GP*GP*AP*AP)-3', 5'-R(*UP*UP*CP*CP*CP*GP*CP)-3', MAGNESIUM ION
Authors:Forster, C, Brauer, A.B.E, Perbandt, M, Lehmann, D, Furste, J.P, Betzel, C, Erdmann, V.A.
Deposit date:2007-09-03
Release date:2007-10-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of an Escherichia Coli Trnagly Microhelix at 2.0 Angstrom Resolution
Biochem.Biophys.Res.Commun., 363, 2007
2V6W
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tRNASer acceptor stem: Conformation and hydration of a microhelix in a crystal structure at 1.8 Angstrom resolution
Descriptor: 5'-R(*GP*GP*AP*GP*AP*GP*AP)-3', 5'-R(*UP*CP*UP*CP*UP*CP*CP)-3'
Authors:Foerster, C, Brauer, A.B.E, Brode, S, Fuerste, J.P, Betzel, C, Erdmann, V.A.
Deposit date:2007-07-23
Release date:2007-11-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Trnaser Acceptor Stem: Conformation and Hydration of a Microhelix in a Crystal Structure at 1.8 A Resolution.
Acta Crystallogr.,Sect.D, 63, 2007
7JVI
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BU of 7jvi by Molmil
Crystal structure of a beta-helix domain retrieved from capybara gut metagenome
Descriptor: Beta-helix domain, CALCIUM ION
Authors:Martins, M.P, Genoroso, W.C, Domingues, M.N, Persinoti, G.F, Morais, M.A.B, Murakami, M.T.
Deposit date:2020-08-21
Release date:2021-09-08
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides.
Nat Commun, 13, 2022
7JVH
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BU of 7jvh by Molmil
Crystal structure of a GH43_12 retrieved from capybara gut metagenome
Descriptor: GLYCEROL, Glycoside Hydrolase Family 43_12
Authors:Cabral, L, Domingues, M.N, Martins, M.P, Persinoti, G.F, Morais, M.A.B, Murakami, M.T.
Deposit date:2020-08-21
Release date:2021-09-08
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Crystal structure of a GH43_12 retrieved from capybara gut metagenome
To Be Published
6MS2
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BU of 6ms2 by Molmil
Crystal structure of the GH43 BlXynB protein from Bacillus licheniformis
Descriptor: CALCIUM ION, Glycoside Hydrolase Family 43
Authors:Zanphorlin, L.M, Morais, M.A.B, Diogo, J.A, Murakami, M.T.
Deposit date:2018-10-16
Release date:2019-04-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.494 Å)
Cite:Structure-guided design combined with evolutionary diversity led to the discovery of the xylose-releasing exo-xylanase activity in the glycoside hydrolase family 43.
Biotechnol. Bioeng., 116, 2019
8D89
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BU of 8d89 by Molmil
Crystal structure of a novel GH5 enzyme retrieved from capybara gut metagenome
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, ACETATE ION, CHLORIDE ION, ...
Authors:Martins, M.P, Morais, M.A.B, Murakami, M.T.
Deposit date:2022-06-08
Release date:2022-11-02
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-beta-mannans.
Acta Crystallogr D Struct Biol, 78, 2022
7SQJ
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BU of 7sqj by Molmil
Cryo-EM structure of the seam subunits of the enteropathogenic E. coli O127:H6 flagellar filament
Descriptor: Flagellin
Authors:Kreutzberger, M.A.B, Chatterjee, S, Frankel, G, Egelman, E.H.
Deposit date:2021-11-05
Release date:2022-03-16
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (6.3 Å)
Cite:Flagellin outer domain dimerization modulates motility in pathogenic and soil bacteria from viscous environments.
Nat Commun, 13, 2022
7SN4
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BU of 7sn4 by Molmil
Cryo-EM structure of the enterohemorrhagic E. coli O157:H7 flagellar filament
Descriptor: Flagellin
Authors:Kreutzberger, M.A.B, Wang, F, Egelman, E.H.
Deposit date:2021-10-27
Release date:2022-03-16
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Flagellin outer domain dimerization modulates motility in pathogenic and soil bacteria from viscous environments.
Nat Commun, 13, 2022
7SN7
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BU of 7sn7 by Molmil
Cryo-EM structure of the enteropathogenic E. coli O127:H6 flagellar filament
Descriptor: Flagellin
Authors:Kreutzberger, M.A.B, Chatterjee, S, Frankel, G, Egelman, E.H.
Deposit date:2021-10-27
Release date:2022-03-16
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Flagellin outer domain dimerization modulates motility in pathogenic and soil bacteria from viscous environments.
Nat Commun, 13, 2022
7SN9
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BU of 7sn9 by Molmil
Cryo-EM structure of the Sinorhizobium meliloti flagellar filament
Descriptor: Flagellin A
Authors:Kreutzberger, M.A.B, Scharf, B.E, Egelman, E.H.
Deposit date:2021-10-27
Release date:2022-03-16
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Flagellin outer domain dimerization modulates motility in pathogenic and soil bacteria from viscous environments.
Nat Commun, 13, 2022
6UQJ
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BU of 6uqj by Molmil
Crystal structure of the GH39 enzyme from Xanthomonas axonopodis pv. citri
Descriptor: Beta-xylosidase
Authors:Morais, M.A.B, Polo, C.C, Santos, C.R, Murakami, M.T.
Deposit date:2019-10-20
Release date:2020-07-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.707 Å)
Cite:Exploring the Molecular Basis for Substrate Affinity and Structural Stability in Bacterial GH39 beta-Xylosidases.
Front Bioeng Biotechnol, 8, 2020
6VPX
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BU of 6vpx by Molmil
Nanodisc of full-length HIV-1 Envelope glycoprotein clone AMC011 in complex with one PGT151 Fab and three 10E8 Fabs
Descriptor: (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rantalainen, K, Ward, A.B.W.
Deposit date:2020-02-04
Release date:2020-04-22
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (5 Å)
Cite:HIV-1 Envelope and MPER Antibody Structures in Lipid Assemblies.
Cell Rep, 31, 2020
6WIU
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BU of 6wiu by Molmil
Crystal structure of a beta-glucosidase from Exiguobacterium marinum
Descriptor: Beta-glucosidase
Authors:Zanphorlin, L.M, Morais, M.A.B, Murakami, M.T.
Deposit date:2020-04-10
Release date:2020-08-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.511 Å)
Cite:A rationally identified marine GH1 beta-glucosidase has distinguishing functional features for simultaneous saccharification and fermentation
Biofuels, Bioprod Bioref, 2020
6WJO
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BU of 6wjo by Molmil
Crystal structure of wild-type Arginine Repressor from the pathogenic bacterium Corynebacterium pseudotuberculosis bound to tyrosine
Descriptor: Arginine repressor, SODIUM ION, SULFATE ION, ...
Authors:Nascimento, A.F.Z, Hernandez-Gonzalez, J.E, de Morais, M.A.B, Murakami, M.T, Carareto, C.M.A, Arni, R.K, Mariutti, R.B.
Deposit date:2020-04-14
Release date:2020-04-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.693 Å)
Cite:A single P115Q mutation modulates specificity in the Corynebacterium pseudotuberculosis arginine repressor.
Biochim Biophys Acta Gen Subj, 1864, 2020
6UFW
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BU of 6ufw by Molmil
Crystal structure of the CBM3 from Bacillus subtilis at 1.28 angstrom resolution
Descriptor: Endoglucanase
Authors:Morais, M.A.B, Paiva, J.H, Murakami, M.T.
Deposit date:2019-09-25
Release date:2020-09-30
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Crystal structure of the CBM3 from Bacillus subtilis at 1.28 angstrom resolution
To Be Published
6WJP
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BU of 6wjp by Molmil
Crystal structure of Arginine Repressor P115Q mutant from the pathogenic bacterium Corynebacterium pseudotuberculosis bound to arginine
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ARGININE, ...
Authors:Nascimento, A.F.Z, Hernandez-Gonzalez, J.E, de Morais, M.A.B, Murakami, M.T, Carareto, C.M.A, Arni, R.K, Mariutti, R.B.
Deposit date:2020-04-14
Release date:2020-04-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:A single P115Q mutation modulates specificity in the Corynebacterium pseudotuberculosis arginine repressor.
Biochim Biophys Acta Gen Subj, 1864, 2020
6X80
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BU of 6x80 by Molmil
Structure of the Campylobacter jejuni G508A Flagellar Filament
Descriptor: 5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulopyranosonic acid, Flagellin A
Authors:Kreutzberger, M.A.B, Wang, F, Egelman, E.H.
Deposit date:2020-06-01
Release date:2020-07-08
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Atomic structure of the Campylobacter jejuni flagellar filament reveals how epsilon Proteobacteria escaped Toll-like receptor 5 surveillance.
Proc.Natl.Acad.Sci.USA, 117, 2020
6B7U
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BU of 6b7u by Molmil
Structure of hen egg-white lysozyme without high-pressure pre-treatment
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Morais, M.A.B, Nascimento, A.F.Z, Tominaga, C.Y, Cristianini, M, Tribst, A.A.L, Murakami, M.T.
Deposit date:2017-10-05
Release date:2018-07-25
Method:X-RAY DIFFRACTION (1.581 Å)
Cite:How high pressure pre-treatments affect the function and structure of hen egg-white lysozyme
Innov Food Sci Emerg Technol, 47, 2018
6B7V
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BU of 6b7v by Molmil
Structure of hen egg-white lysozyme pre-treated with high-pressure homogenization at 120 MPa
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Morais, M.A.B, Nascimento, A.F.Z, Tominaga, C.Y, Cristianini, M, Tribst, A.A.L, Murakami, M.T.
Deposit date:2017-10-05
Release date:2018-07-25
Method:X-RAY DIFFRACTION (1.482 Å)
Cite:How high pressure pre-treatments affect the function and structure of hen egg-white lysozyme
Innov Food Sci Emerg Technol, 47, 2018
6AZA
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BU of 6aza by Molmil
NMR structure of sea anemone toxin Kappa-actitoxin-Ate1a
Descriptor: ARG-CYS-LYS-THR-CYS-SER-LYS-GLY-ARG-CYS-ARG-PRO-LYS-PRO-ASN-CYS-GLY-NH2
Authors:Chin, Y.K.-Y, Madio, B, King, G.F, Undheim, E.A.B.
Deposit date:2017-09-10
Release date:2018-09-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:PHAB toxins: a unique family of predatory sea anemone toxins evolving via intra-gene concerted evolution defines a new peptide fold.
Cell. Mol. Life Sci., 75, 2018
6D25
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BU of 6d25 by Molmil
Crystal structure of the GH51 arabinofuranosidase from Xanthomonas axonopodis pv. citri
Descriptor: Alpha-L-arabinosidase, GLYCEROL
Authors:Santos, C.R, Morais, M.A.B, Tonoli, C.C.C, Giuseppe, P.O, Murakami, M.T.
Deposit date:2018-04-13
Release date:2019-02-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.
Biotechnol Biofuels, 11, 2018
6BYG
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BU of 6byg by Molmil
Crystal structure of the nucleophile mutant (E575A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri
Descriptor: Beta-mannosidase, beta-D-mannopyranose
Authors:Domingues, M.N, Vieira, P.S, Morais, M.A.B, Murakami, M.T.
Deposit date:2017-12-20
Release date:2018-07-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Structural basis of exo-beta-mannanase activity in the GH2 family.
J. Biol. Chem., 293, 2018
6B7W
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BU of 6b7w by Molmil
Structure of hen egg-white lysozyme pre-treated with high pressure (600 MPa) under isobaric condition
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Morais, M.A.B, Nascimento, A.F.Z, Tominaga, C.Y, Cristianini, M, Tribst, A.A.L, Murakami, M.T.
Deposit date:2017-10-05
Release date:2018-07-25
Method:X-RAY DIFFRACTION (1.482 Å)
Cite:How high pressure pre-treatments affect the function and structure of hen egg-white lysozyme
Innov Food Sci Emerg Technol, 47, 2018
6BYC
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BU of 6byc by Molmil
Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri
Descriptor: ACETATE ION, Beta-mannosidase, DI(HYDROXYETHYL)ETHER, ...
Authors:Domingues, M.N, Vieira, P.S, Morais, M.A.B, Murakami, M.T.
Deposit date:2017-12-20
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Structural basis of exo-beta-mannanase activity in the GH2 family.
J. Biol. Chem., 293, 2018
6BYE
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BU of 6bye by Molmil
Crystal structure of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri in complex with mannose
Descriptor: ACETATE ION, Beta-mannosidase, beta-D-mannopyranose
Authors:Domingues, M.N, Vieira, P.S, Morais, M.A.B, Murakami, M.T.
Deposit date:2017-12-20
Release date:2018-07-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.126 Å)
Cite:Structural basis of exo-beta-mannanase activity in the GH2 family.
J. Biol. Chem., 293, 2018

224201

數據於2024-08-28公開中

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