Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4ES2
DownloadVisualize
BU of 4es2 by Molmil
Double-stranded Endonuclease Activity in B. halodurans Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-associated Cas2 Protein
Descriptor: BH0342 protein
Authors:Ke, A, Nam, K.H.
Deposit date:2012-04-21
Release date:2012-08-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.299 Å)
Cite:Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein.
J. Biol. Chem., 287, 2012
5ZYE
DownloadVisualize
BU of 5zye by Molmil
Crystal Structure of Glucose Isomerase Soaked with Mn2+ and Glucose
Descriptor: MANGANESE (II) ION, Xylose isomerase, alpha-D-glucopyranose
Authors:Nam, K.H.
Deposit date:2018-05-24
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural analysis of substrate recognition by glucose isomerase in Mn2+binding mode at M2 site in S. rubiginosus
Biochem. Biophys. Res. Commun., 503, 2018
5ZYD
DownloadVisualize
BU of 5zyd by Molmil
Crystal Structure of Glucose Isomerase Soaked with Glucose
Descriptor: ACETATE ION, MAGNESIUM ION, Xylose isomerase
Authors:Nam, K.H.
Deposit date:2018-05-24
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural analysis of substrate recognition by glucose isomerase in Mn2+binding mode at M2 site in S. rubiginosus
Biochem. Biophys. Res. Commun., 503, 2018
5ZYC
DownloadVisualize
BU of 5zyc by Molmil
Crystal Structure of Glucose Isomerase Soaked with Mn2+
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, MANGANESE (II) ION, ...
Authors:Nam, K.H.
Deposit date:2018-05-24
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural analysis of substrate recognition by glucose isomerase in Mn2+binding mode at M2 site in S. rubiginosus
Biochem. Biophys. Res. Commun., 503, 2018
6IG7
DownloadVisualize
BU of 6ig7 by Molmil
Crystal structure of thermolysin delivered in polyacrylamide using x-ray free electron laser
Descriptor: CALCIUM ION, LEUCINE, LYSINE, ...
Authors:Nam, K.H.
Deposit date:2018-09-25
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Polyacrylamide injection matrix for serial femtosecond crystallography.
Sci Rep, 9, 2019
6IRJ
DownloadVisualize
BU of 6irj by Molmil
Crystal structure of lysozyme by fixed-target serial femtosecond crystallography
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Nam, K.H.
Deposit date:2018-11-13
Release date:2019-05-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Nylon mesh-based sample holder for fixed-target serial femtosecond crystallography.
Sci Rep, 9, 2019
6JXQ
DownloadVisualize
BU of 6jxq by Molmil
Room temperature structure of lysozyme delivered in polyacrylamide by serial millisecond crystallography
Descriptor: CHLORIDE ION, Lysozyme C
Authors:Nam, K.H.
Deposit date:2019-04-24
Release date:2019-05-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Sample delivery using viscous media, a syringe and a syringe pump for serial crystallography.
J.Synchrotron Radiat., 26, 2019
6JXP
DownloadVisualize
BU of 6jxp by Molmil
Room temperature structure of lysozyme delivered in LCP by serial millisecond crystallography
Descriptor: CHLORIDE ION, Lysozyme C
Authors:Nam, K.H.
Deposit date:2019-04-24
Release date:2019-05-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Sample delivery using viscous media, a syringe and a syringe pump for serial crystallography.
J.Synchrotron Radiat., 26, 2019
6LOF
DownloadVisualize
BU of 6lof by Molmil
Crystal structure of ZsYellow soaked by Cu2+
Descriptor: GFP-like fluorescent chromoprotein FP538
Authors:Nam, K.H.
Deposit date:2020-01-05
Release date:2020-01-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Spectroscopic and Structural Analysis of Cu 2+ -Induced Fluorescence Quenching of ZsYellow.
Biosensors (Basel), 10, 2020
4HZ7
DownloadVisualize
BU of 4hz7 by Molmil
Crystal structure of BglB with glucose
Descriptor: beta-D-glucopyranose, beta-glucosidase
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2012-11-14
Release date:2012-12-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into the substrate recognition properties of beta-glucosidase.
Biochem.Biophys.Res.Commun., 391, 2010
4HZ6
DownloadVisualize
BU of 4hz6 by Molmil
crystal structure of BglB
Descriptor: Beta-glucosidase, GLYCEROL
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2012-11-14
Release date:2012-12-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural insights into the substrate recognition properties of beta-glucosidase.
Biochem.Biophys.Res.Commun., 391, 2010
4HZ8
DownloadVisualize
BU of 4hz8 by Molmil
Crystal structure of BglB with natural substrate
Descriptor: Beta-glucosidase, beta-D-glucopyranose
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2012-11-14
Release date:2012-12-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Structural insights into the substrate recognition properties of beta-glucosidase.
Biochem.Biophys.Res.Commun., 391, 2010
4H79
DownloadVisualize
BU of 4h79 by Molmil
Crystal structure of CasB from Thermobifida fusca
Descriptor: 1,2-ETHANEDIOL, CRISPR-associated protein, Cse2 family
Authors:Ke, A, Nam, K.H.
Deposit date:2012-09-20
Release date:2012-10-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Nucleic acid binding surface and dimer interface revealed by CRISPR-associated CasB protein structures.
Febs Lett., 586, 2012
4H7A
DownloadVisualize
BU of 4h7a by Molmil
Crystal structure of CasB from Thermus thermophilus
Descriptor: CRISPR-associated protein Cse2
Authors:Ke, A, Nam, K.H.
Deposit date:2012-09-20
Release date:2012-10-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Nucleic acid binding surface and dimer interface revealed by CRISPR-associated CasB protein structures.
Febs Lett., 586, 2012
3CMJ
DownloadVisualize
BU of 3cmj by Molmil
Crystal Structure of engineered Beta-Glucosidase from Soil metagenome
Descriptor: Beta-glucosidase, S,R MESO-TARTARIC ACID, SODIUM ION
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2008-03-22
Release date:2008-10-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of engineered beta-glucosidase from a soil metagenome.
Proteins, 73, 2008
5HZU
DownloadVisualize
BU of 5hzu by Molmil
Crystal structure of Dronpa-Ni2+
Descriptor: Fluorescent protein Dronpa, NICKEL (II) ION
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2016-02-03
Release date:2017-03-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structures of Dronpa complexed with quenchable metal ions provide insight into metal biosensor development
FEBS Lett., 590, 2016
5HZS
DownloadVisualize
BU of 5hzs by Molmil
Crystal structure of Dronpa-Co2+
Descriptor: COBALT (II) ION, Fluorescent protein Dronpa
Authors:Hwang, K.Y, Nam, K.H.
Deposit date:2016-02-03
Release date:2017-03-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Crystal structures of Dronpa complexed with quenchable metal ions provide insight into metal biosensor development
FEBS Lett., 590, 2016
5Y8R
DownloadVisualize
BU of 5y8r by Molmil
ZsYellow at pH 3.5
Descriptor: GFP-like fluorescent chromoprotein FP538
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2017-08-21
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Disruption of the hydrogen bonding network determines the pH-induced non-fluorescent state of the fluorescent protein ZsYellow by protonation of Glu221.
Biochem. Biophys. Res. Commun., 493, 2017
5Y8Q
DownloadVisualize
BU of 5y8q by Molmil
ZsYellow at pH 8.0
Descriptor: GFP-like fluorescent chromoprotein FP538
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2017-08-21
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Disruption of the hydrogen bonding network determines the pH-induced non-fluorescent state of the fluorescent protein ZsYellow by protonation of Glu221.
Biochem. Biophys. Res. Commun., 493, 2017
5Y4J
DownloadVisualize
BU of 5y4j by Molmil
Crystal structure of glucose isomerase in complex with xylitol inhibitor in one metal binding mode
Descriptor: MAGNESIUM ION, Xylitol, Xylose isomerase
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2017-08-03
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of glucose isomerase in complex with xylitol inhibitor in one metal binding mode
Biochem. Biophys. Res. Commun., 493, 2017
5Y4I
DownloadVisualize
BU of 5y4i by Molmil
Crystal structure of glucose isomerase in complex with glycerol in one metal binding mode
Descriptor: ACETATE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Bae, J.E, Kim, I.J, Nam, K.H.
Deposit date:2017-08-03
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of glucose isomerase in complex with xylitol inhibitor in one metal binding mode
Biochem. Biophys. Res. Commun., 493, 2017
8H8U
DownloadVisualize
BU of 8h8u by Molmil
Room-temperature structure of lysozyme by pink-beam serial crystallography (50 ms, center)
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Kim, Y, Nam, K.H.
Deposit date:2022-10-24
Release date:2023-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Data of pink-beam serial synchrotron crystallography at the Pohang Light Source II.
Data Brief, 52, 2024
8H8T
DownloadVisualize
BU of 8h8t by Molmil
Room-temperature structure of lysozyme by pink-beam serial crystallography (50 ms, edge)
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Kim, Y, Nam, K.H.
Deposit date:2022-10-24
Release date:2023-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Data of pink-beam serial synchrotron crystallography at the Pohang Light Source II.
Data Brief, 52, 2024
8H8V
DownloadVisualize
BU of 8h8v by Molmil
Room-temperature structure of lysozyme by pink-beam serial crystallography (100 ms, edge)
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Kim, Y, Nam, K.H.
Deposit date:2022-10-24
Release date:2023-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Data of pink-beam serial synchrotron crystallography at the Pohang Light Source II.
Data Brief, 52, 2024
8H8W
DownloadVisualize
BU of 8h8w by Molmil
Room-temperature structure of lysozyme by pink-beam serial crystallography (100 ms, center)
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Kim, Y, Nam, K.H.
Deposit date:2022-10-24
Release date:2023-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Data of pink-beam serial synchrotron crystallography at the Pohang Light Source II.
Data Brief, 52, 2024

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon