Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5YVX
DownloadVisualize
BU of 5yvx by Molmil
Crystal structure of SDG8 CW domain in complex with H3K4me1 peptide
Descriptor: H3K4me1, Histone-lysine N-methyltransferase ASHH2, ZINC ION
Authors:Liu, Y, Huang, Y.
Deposit date:2017-11-27
Release date:2018-03-14
Last modified:2018-05-09
Method:X-RAY DIFFRACTION (1.591 Å)
Cite:Uncovering the mechanistic basis for specific recognition of monomethylated H3K4 by the CW domain ofArabidopsishistone methyltransferase SDG8.
J. Biol. Chem., 293, 2018
8H43
DownloadVisualize
BU of 8h43 by Molmil
Crystal structure of PHF1 Tudor domain in complex with hit 1
Descriptor: 2-[(3S)-piperidin-3-yl]-1,3-benzoxazole, PHD finger protein 1
Authors:Liu, Y, Ruan, K.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of PHF1 Tudor domain in complex with hit 1
To be published
8HNI
DownloadVisualize
BU of 8hni by Molmil
hnRNP A2/B1 RRMs in complex with telomeric DNA
Descriptor: DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*T)-3'), Heterogeneous nuclear ribonucleoproteins A2/B1
Authors:Liu, Y, Abula, A, Xiao, H, Guo, H, Li, T, Zheng, L, Chen, B, Nguyen, H, Ji, X.
Deposit date:2022-12-07
Release date:2023-11-29
Method:X-RAY DIFFRACTION (2.644 Å)
Cite:Structural Insight Into hnRNP A2/B1 Homodimerization and DNA Recognition.
J.Mol.Biol., 435, 2023
7DL5
DownloadVisualize
BU of 7dl5 by Molmil
Crystal structure of Thermotoga Maritima ferritin mutant at 2.3 Angstrom resolution
Descriptor: FE (III) ION, Ferritin, MAGNESIUM ION
Authors:Liu, Y, Leng, X, Zang, J, Zhao, G.
Deposit date:2020-11-26
Release date:2021-12-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A short helix regulates conversion of dimeric and 24-meric ferritin architectures.
Int.J.Biol.Macromol., 203, 2022
7DZN
DownloadVisualize
BU of 7dzn by Molmil
Crystal Structure of the cross-restricted T18A TCR and HLAB4201 bound to HIV-1 Gag TL9 peptide
Descriptor: Beta-2-microglobulin, Gag-Pol polyprotein, MHC class I antigen, ...
Authors:Liu, Y, Yin, L.
Deposit date:2021-01-25
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Cross-reactive TCR with alloreactivity for immunodominant HIV-1 epitope Gag TL9 with enhanced control of viral infection
Biorxiv, 2021
7DZM
DownloadVisualize
BU of 7dzm by Molmil
Crystal Structure of the cross-restricted T18A TCR and HLAB8101 bound to HIV-1 Gag TL9 peptide
Descriptor: Beta-2-microglobulin, Gag-Pol polyprotein, MHC class I antigen, ...
Authors:Liu, Y, Yin, L.
Deposit date:2021-01-25
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Cross-reactive TCR with alloreactivity for immunodominant HIV-1 epitope Gag TL9 with enhanced control of viral infection
Biorxiv, 2021
6JPI
DownloadVisualize
BU of 6jpi by Molmil
Crystal structure of PA4674 in complex with its operator DNA (28bp) from Pseudomonas aeruginosa
Descriptor: DNA (28-MER), HTH cro/C1-type domain-containing protein
Authors:Liu, Y, Gao, Z, Zhang, H, Dong, Y.
Deposit date:2019-03-27
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.143 Å)
Cite:Crystal structure of PA4674 in complex with its operator DNA (28bp) from Pseudomonas aeruginosa
To Be Published
7FA3
DownloadVisualize
BU of 7fa3 by Molmil
Selenomethionine-derived structure of Aca1 in Pseudomonas phage JBD30
Descriptor: Aca1
Authors:Liu, Y, Zhang, L, Wu, B, Huang, H.
Deposit date:2021-07-05
Release date:2021-07-21
Last modified:2022-02-02
Method:X-RAY DIFFRACTION (1.847 Å)
Cite:Structural basis for anti-CRISPR repression mediated by bacterial operon proteins Aca1 and Aca2.
J.Biol.Chem., 297, 2021
7XV9
DownloadVisualize
BU of 7xv9 by Molmil
Crystal structure of the Human TR4 DNA-Binding Domain
Descriptor: Nuclear receptor subfamily 2 group C member 2, ZINC ION
Authors:Liu, Y, Chen, Z.
Deposit date:2022-05-21
Release date:2022-12-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
7XV8
DownloadVisualize
BU of 7xv8 by Molmil
Crystal structure of the Human TR4 DNA-Binding Domain Homodimer Bound to DR1 Response Element
Descriptor: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*GP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), Nuclear receptor subfamily 2 group C member 2, ...
Authors:Liu, Y, Chen, Z.
Deposit date:2022-05-21
Release date:2022-12-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.199 Å)
Cite:Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
7XV6
DownloadVisualize
BU of 7xv6 by Molmil
Crystal structure of the Human TR4 DNA-Binding Domain with C-terminal extension (DBD-CTE) Homodimer Bound to DR1 Response Element
Descriptor: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*CP*TP*GP*C)-3'), DNA (5'-D(*GP*GP*CP*AP*GP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'), NR2C2 protein, ...
Authors:Liu, Y, Chen, Z.
Deposit date:2022-05-21
Release date:2022-12-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
7XVA
DownloadVisualize
BU of 7xva by Molmil
Crystal structure of the Human TR4 Ligand Binding Domain in complex with the JAZF1 corepressor fragment
Descriptor: Juxtaposed with another zinc finger protein 1, Nuclear receptor subfamily 2 group C member 2
Authors:Liu, Y, Chen, Z.
Deposit date:2022-05-21
Release date:2022-12-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.856 Å)
Cite:Structures of human TR4LBD-JAZF1 and TR4DBD-DNA complexes reveal the molecular basis of transcriptional regulation.
Nucleic Acids Res., 51, 2023
7VKH
DownloadVisualize
BU of 7vkh by Molmil
Crystal structure of AF9 YEATS domain in complex with hit 2
Descriptor: GLYCEROL, Protein AF-9, ~{N}-(3-azanyl-4-chloranyl-phenyl)-2-methoxy-ethanamide
Authors:Liu, Y, Ruan, K.
Deposit date:2021-09-30
Release date:2022-10-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Fragment-Based Discovery of AF9 YEATS Domain Inhibitors.
Int J Mol Sci, 23, 2022
7VKG
DownloadVisualize
BU of 7vkg by Molmil
Crystal structure of AF9 YEATS domain in complex with Compound 10
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Protein AF-9, ...
Authors:Liu, Y, Ruan, K.
Deposit date:2021-09-29
Release date:2022-10-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Fragment-Based Discovery of AF9 YEATS Domain Inhibitors.
Int J Mol Sci, 23, 2022
5ZEV
DownloadVisualize
BU of 5zev by Molmil
Solution structure of G-quadruplex formed in vegfr-2 proximal promoter sequence
Descriptor: DNA (5'-D(*GP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*TP*GP*AP*GP*GP*TP*GP*CP*GP*GP*GP*GP*T)-3')
Authors:Liu, Y, Lan, W.X.
Deposit date:2018-02-28
Release date:2018-04-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:A putative G-quadruplex structure in the proximal promoter ofVEGFR-2has implications for drug design to inhibit tumor angiogenesis.
J. Biol. Chem., 293, 2018
6JHP
DownloadVisualize
BU of 6jhp by Molmil
Crystal structure of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-galactosidase
Authors:Liu, Y, Huang, P, Ma, J, Jiang, Z.
Deposit date:2019-02-18
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.559 Å)
Cite:Crystal structure and phylogenetic analysis of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila
To be published
7WDL
DownloadVisualize
BU of 7wdl by Molmil
Fungal immunomodulatory protein FIP-nha
Descriptor: Fungal immunomodulatory protein
Authors:Liu, Y, Bastiaan-Net, S, Zhang, Y, Hoppenbrouwers, T, Xie, Y, Wang, Y, Wei, X, Du, G, Zhang, H, Imam, K.M.S.U, Wichers, H.J, Li, Z.
Deposit date:2021-12-22
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:Linking the thermostability of FIP-nha (Nectria haematococca) to its structural properties.
Int.J.Biol.Macromol., 213, 2022
7VYW
DownloadVisualize
BU of 7vyw by Molmil
Crystal structure of the chromodomain of Arabidopsis LHP1 in complex with methylated histone H3K9 peptide
Descriptor: Chromo domain-containing protein LHP1, SULFATE ION, methylated histone H3K9 peptide
Authors:Liu, Y, Zhang, M, Min, J.
Deposit date:2021-11-15
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for the recognition of methylated histone H3 by the Arabidopsis LHP1 chromodomain.
J.Biol.Chem., 298, 2022
7VZ2
DownloadVisualize
BU of 7vz2 by Molmil
Crystal structure of chromodomain of Arabidopsis LHP1
Descriptor: Chromo domain-containing protein LHP1, UNKNOWN ATOM OR ION
Authors:Liu, Y, Min, J.
Deposit date:2021-11-15
Release date:2022-02-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for the recognition of methylated histone H3 by the Arabidopsis LHP1 chromodomain.
J.Biol.Chem., 298, 2022
7WDM
DownloadVisualize
BU of 7wdm by Molmil
Fungal immunomodulatory protein FIP-gmi
Descriptor: Immunomodulatory protein
Authors:Liu, Y, Bastiaan-Net, S, Zhang, Y, Hoppenbrouwers, T, Xie, Y, Wang, Y, Wei, X, Du, G, Zhang, H, Imam, K.M.S.U, Wichers, H.J, Li, Z.
Deposit date:2021-12-22
Release date:2022-12-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.123 Å)
Cite:Linking the thermostability of FIP-nha (Nectria haematococca) to its structural properties
To Be Published
7UGA
DownloadVisualize
BU of 7uga by Molmil
Solution structure of NPSL2
Descriptor: NPSL2 RNA (43-MER)
Authors:Liu, Y, Keane, S.C.
Deposit date:2022-03-24
Release date:2022-04-13
Last modified:2024-05-15
Method:SOLUTION NMR, SOLUTION SCATTERING
Cite:Solution Structure of NPSL2, A Regulatory Element in the oncomiR-1 RNA.
J.Mol.Biol., 434, 2022
7X9X
DownloadVisualize
BU of 7x9x by Molmil
Thermotoga Maritima ferritin variant-Tm-E(G40E) with Zn
Descriptor: FE (III) ION, Ferritin, ZINC ION
Authors:Liu, Y, Zhao, G.
Deposit date:2022-03-16
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Directed Self-Assembly of Dimeric Building Blocks into Networklike Protein Origami to Construct Hydrogels.
Acs Nano, 16, 2022
7XA4
DownloadVisualize
BU of 7xa4 by Molmil
Thermotoga maritima ferritin variant-Tm-E (S111H) with Zn
Descriptor: Ferritin, ZINC ION
Authors:Liu, Y, Zhao, G.
Deposit date:2022-03-17
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Directed Self-Assembly of Dimeric Building Blocks into Networklike Protein Origami to Construct Hydrogels.
Acs Nano, 16, 2022
7XA2
DownloadVisualize
BU of 7xa2 by Molmil
Thermotoga maritima ferritin variant-Tm-E(S111H)
Descriptor: FE (III) ION, Ferritin
Authors:Liu, Y, Zhao, G.
Deposit date:2022-03-16
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Directed Self-Assembly of Dimeric Building Blocks into Networklike Protein Origami to Construct Hydrogels.
Acs Nano, 16, 2022
7W5M
DownloadVisualize
BU of 7w5m by Molmil
Crystal structure of AtNASP in complex of H3 alpha3 helix peptide
Descriptor: GLYCEROL, H3 alpha3 helix peptide, SULFATE ION, ...
Authors:Liu, Y, Bao, H.
Deposit date:2021-11-30
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for histone H3 recognition by NASP in Arabidopsis.
J Integr Plant Biol, 64, 2022

224201

数据于2024-08-28公开中

PDB statisticsPDBj update infoContact PDBjnumon