Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4E1U
DownloadVisualize
BU of 4e1u by Molmil
[Ru(bpy)2 dppz]2+ bound to DNA
Descriptor: 5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3', BARIUM ION, Delta-[Ru(bpy)2dppz]2+
Authors:Song, H, Kaiser, J.T, Barton, J.K.
Deposit date:2012-03-07
Release date:2012-06-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Crystal structure of delta-[Ru(bpy)2dppz]2+ bound to mismatched DNA reveals side-by-side metalloinsertion and intercalation.
Nat Chem, 4, 2012
2C8T
DownloadVisualize
BU of 2c8t by Molmil
The 3.0 A Resolution Structure of Caseinolytic Clp Protease 1 from Mycobacterium tuberculosis
Descriptor: ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1
Authors:Ingvarsson, H, Hogbom, M, Jones, T.A, Unge, T.
Deposit date:2005-12-07
Release date:2007-02-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Insights Into the Inter-Ring Plasticity of Caseinolytic Proteases from the X-Ray Structure of Mycobacterium Tuberculosis Clpp1.
Acta Crystallogr.,Sect.D, 63, 2007
1HSE
DownloadVisualize
BU of 1hse by Molmil
H253M N TERMINAL LOBE OF HUMAN LACTOFERRIN
Descriptor: CARBONATE ION, FE (III) ION, LACTOFERRIN
Authors:Nicholson, H, Anderson, B.F, Baker, E.N.
Deposit date:1996-12-11
Release date:1997-03-12
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mutagenesis of the histidine ligand in human lactoferrin: iron binding properties and crystal structure of the histidine-253-->methionine mutant.
Biochemistry, 36, 1997
1HX1
DownloadVisualize
BU of 1hx1 by Molmil
CRYSTAL STRUCTURE OF A BAG DOMAIN IN COMPLEX WITH THE HSC70 ATPASE DOMAIN
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BAG family molecular chaperone regulator 1, Heat shock 70 kDa protein 8
Authors:Sondermann, H, Scheufler, C, Moarefi, I.
Deposit date:2001-01-11
Release date:2001-03-07
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a Bag/Hsc70 complex: convergent functional evolution of Hsp70 nucleotide exchange factors.
Science, 291, 2001
1I3W
DownloadVisualize
BU of 1i3w by Molmil
ACTINOMYCIN D BINDING TO CGATCGATCG
Descriptor: 5'-D(*C*GP*AP*TP*CP*GP*AP*(BRU)P*CP*GP)-3', ACTINOMYCIN D
Authors:Robinson, H, Gao, Y.-G, Yang, X.-L, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:2001-02-17
Release date:2001-05-21
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystallographic Analysis of a Novel Complex of Actinomycin D Bound to the DNA Decamer Cgatcgatcg.
Biochemistry, 40, 2001
1AZQ
DownloadVisualize
BU of 1azq by Molmil
HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX
Descriptor: DNA (5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3'), PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D)
Authors:Robinson, H, Gao, Y.-G, Mccrary, B.S, Edmondson, S.P, Shriver, J.W, Wang, A.H.-J.
Deposit date:1997-11-20
Release date:1999-01-13
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The hyperthermophile chromosomal protein Sac7d sharply kinks DNA.
Nature, 392, 1998
1AWX
DownloadVisualize
BU of 1awx by Molmil
SH3 DOMAIN FROM BRUTON'S TYROSINE KINASE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: BRUTON'S TYROSINE KINASE
Authors:Hansson, H, Mattsson, P.T, Allard, P, Haapaniemi, P, Vihinen, M, Smith, C.I.E, Hard, T.
Deposit date:1997-10-06
Release date:1998-04-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain from Bruton's tyrosine kinase.
Biochemistry, 37, 1998
1AZP
DownloadVisualize
BU of 1azp by Molmil
HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX
Descriptor: DNA (5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'), PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D)
Authors:Robinson, H, Gao, Y.-G, Mccrary, B.S, Edmondson, S.P, Shriver, J.W, Wang, A.H.-J.
Deposit date:1997-11-19
Release date:1999-01-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The hyperthermophile chromosomal protein Sac7d sharply kinks DNA.
Nature, 392, 1998
1AWW
DownloadVisualize
BU of 1aww by Molmil
SH3 DOMAIN FROM BRUTON'S TYROSINE KINASE, NMR, 42 STRUCTURES
Descriptor: BRUTON'S TYROSINE KINASE
Authors:Hansson, H, Mattsson, P.T, Allard, P, Haapaniemi, P, Vihinen, M, Smith, C.I.E, Hard, T.
Deposit date:1997-10-06
Release date:1998-04-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain from Bruton's tyrosine kinase.
Biochemistry, 37, 1998
1EFC
DownloadVisualize
BU of 1efc by Molmil
INTACT ELONGATION FACTOR FROM E.COLI
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PROTEIN (ELONGATION FACTOR)
Authors:Song, H, Parsons, M.R, Rowsell, S, Leonard, G, Phillips, S.E.V.
Deposit date:1998-11-24
Release date:1999-03-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 A resolution.
J.Mol.Biol., 285, 1999
1AMD
DownloadVisualize
BU of 1amd by Molmil
NMR STUDY OF DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN WP-652, MINIMIZED AVERAGE STRUCTURE
Descriptor: BIS-DAUNORUBICIN, DNA (5'-D(*TP*GP*TP*AP*CP*A)-3')
Authors:Robinson, H, Wang, A.H.-J.
Deposit date:1997-06-12
Release date:1997-09-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy.
Biochemistry, 36, 1997
1CC3
DownloadVisualize
BU of 1cc3 by Molmil
PURPLE CUA CENTER
Descriptor: COPPER (II) ION, PROTEIN (CUA AZURIN)
Authors:Robinson, H, Ang, M.C, Gao, Y.-G, Hay, M.T, Lu, Y, Wang, A.H.-J.
Deposit date:1999-03-03
Release date:1999-12-23
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis of electron transfer modulation in the purple CuA center.
Biochemistry, 38, 1999
1DNO
DownloadVisualize
BU of 1dno by Molmil
A-DNA/RNA DODECAMER R(GCG)D(TATACGC) MG BINDING SITES
Descriptor: DNA/RNA (5'-R(*GP*CP*GP)-D(*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-16
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
1DNZ
DownloadVisualize
BU of 1dnz by Molmil
A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES
Descriptor: DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-17
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
1DNT
DownloadVisualize
BU of 1dnt by Molmil
RNA/DNA DODECAMER R(GC)D(GTATACGC) WITH MAGNESIUM BINDING SITES
Descriptor: DNA/RNA (5'-R(*GP*CP)-D(*GP*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-16
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
1BHR
DownloadVisualize
BU of 1bhr by Molmil
2'-DEOXY-ISOGUANOSINE BASE PAIRED TO THYMIDINE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: DNA (5'-D(*CP*GP*CP*IGUP*AP*AP*TP*TP*TP*GP*CP*G)-3')
Authors:Robinson, H, Gao, Y.-G, Bauer, C, Roberts, C, Switzer, C, Wang, A.H.-J.
Deposit date:1998-06-10
Release date:1998-11-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:2'-Deoxyisoguanosine adopts more than one tautomer to form base pairs with thymidine observed by high-resolution crystal structure analysis.
Biochemistry, 37, 1998
1DNX
DownloadVisualize
BU of 1dnx by Molmil
RNA/DNA DODECAMER R(G)D(CGTATACGC) WITH MAGNESIUM BINDING SITES
Descriptor: DNA/RNA (5'-R(*GP)-D(*CP*GP*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-16
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
1AL9
DownloadVisualize
BU of 1al9 by Molmil
NMR STUDY OF DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN, MINIMIZED AVERAGE STRUCTURE
Descriptor: 4-METHYLBENZYL-N-BIS[DAUNOMYCIN], DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3')
Authors:Robinson, H, Wang, A.H.-J.
Deposit date:1997-06-12
Release date:1997-09-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy.
Biochemistry, 36, 1997
6ISS
DownloadVisualize
BU of 6iss by Molmil
Lignin peroxidase H8 triple mutant S49C/A67C/H239
Descriptor: CALCIUM ION, Ligninase H8, PROTOPORPHYRIN IX CONTAINING FE
Authors:Seo, H, Son, H, Kim, K.-J.
Deposit date:2018-11-19
Release date:2019-11-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Extra disulfide and ionic salt bridge improves the thermostability of lignin peroxidase H8 under acidic condition
Enzyme.Microb.Technol., 148, 2021
5O2W
DownloadVisualize
BU of 5o2w by Molmil
Extended catalytic domain of Hypocrea jecorina LPMO 9A.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, Glycoside hydrolase family 61, ...
Authors:Karkehabadi, S, Hansson, H, Sandgren, M, Mikelssen, N.E.
Deposit date:2017-05-23
Release date:2017-09-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:High-resolution structure of a lytic polysaccharide monooxygenase from Hypocrea jecorina reveals a predicted linker as an integral part of the catalytic domain.
J. Biol. Chem., 292, 2017
9C1R
DownloadVisualize
BU of 9c1r by Molmil
Crystal structure of mutant cMET D1228N kinase domain in complex with inhibitor compound 13
Descriptor: GLYCEROL, Hepatocyte growth factor receptor, N-(2,5-difluoro-4-{[(1s,3S)-3-(1-methyl-1H-pyrazol-3-yl)cyclobutyl][(8R)-pyrazolo[1,5-a]pyrazin-4-yl]amino}phenyl)-2-(5-fluoropyridin-2-yl)-3-oxo-2,3-dihydropyridazine-4-carboxamide
Authors:Simpson, H, Wu, W.-I, Mou, T.-C.
Deposit date:2024-05-29
Release date:2024-08-21
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Discovery of Pyrazolopyrazines as Selective, Potent, and Mutant-Active MET Inhibitors with Intracranial Efficacy.
J.Med.Chem., 67, 2024
1L24
DownloadVisualize
BU of 1l24 by Molmil
ENHANCED PROTEIN THERMOSTABILITY FROM SITE-DIRECTED MUTATIONS THAT DECREASE THE ENTROPY OF UNFOLDING
Descriptor: T4 LYSOZYME
Authors:Nicholson, H, Matthews, B.W.
Deposit date:1989-05-01
Release date:1990-01-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding.
Proc.Natl.Acad.Sci.USA, 84, 1987
1L23
DownloadVisualize
BU of 1l23 by Molmil
ENHANCED PROTEIN THERMOSTABILITY FROM SITE-DIRECTED MUTATIONS THAT DECREASE THE ENTROPY OF UNFOLDING
Descriptor: T4 LYSOZYME
Authors:Nicholson, H, Matthews, B.W.
Deposit date:1989-05-01
Release date:1990-01-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding.
Proc.Natl.Acad.Sci.USA, 84, 1987
7ZAZ
DownloadVisualize
BU of 7zaz by Molmil
macrocyclase OphP with ZPP
Descriptor: 1,2-ETHANEDIOL, BICARBONATE ION, DIMETHYL SULFOXIDE, ...
Authors:Song, H, Naismith, J.H.
Deposit date:2022-03-23
Release date:2022-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular basis for the enzymatic macrocyclization of multiply backbone N-methylated peptides
Biorxiv, 2022
7ZB2
DownloadVisualize
BU of 7zb2 by Molmil
apo macrocyclase OphP
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Song, H, Naismith, J.H.
Deposit date:2022-03-23
Release date:2022-07-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Molecular basis for the enzymatic macrocyclization of multiply backbone N-methylated peptides
Biorxiv, 2022

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon