PDB file name : pdb1uu8.ent

Chains and HETATMs selected: 
  ATOM        A

The following atoms are removed from PDB data on concern that they may have 
abnormally large fluctuations, because they interact with few atoms.
  ATOM     94  CG  LYS A  83      35.668  75.125  44.280  1.00 44.13           C  
  ATOM     95  CD  LYS A  83      37.051  75.355  44.875  1.00 47.41           C  
  ATOM     96  CE  LYS A  83      37.193  76.721  45.471  1.00 51.16           C  
  ATOM     97  NZ  LYS A  83      36.974  77.770  44.426  1.00 56.13           N  
  ATOM   2221  N   LEU A 358      39.100  95.673  18.060  1.00 62.78           N  

= Normal mode analysis calculation =

No. of modes used in the calculation : All modes.

Parameters of potential energies:
  1-4 and 1-5 non-bonded interactions: E(d) = A*exp(-d(PDB)**2/B**2)(d-d(PDB))**2.
  Loop-closing potential:              E(d) = A*(d-d(PDB))**2.
    for a disulfide bond and one of the bonds in the DNA and RNA sugar ring.
  where d and d(PDB) are distances between atoms in calculation and in PDB data, 
  respectively.

  Interaction type   A       B      Cutoff distance (A)
    1-4             1.00    5.00      100.00
    1-5             1.00    5.00      100.00
    Loop-closing  100.00

Temperature adjustment by magnitude of fluctuation:
  Set to mean displacements of atoms       0.500 A

Animation
  No. of frames: 11
  Mean displacements (A):    0.50

Displacement vector
  Mean length of vectors (A):    3.00
