PDB file name : pdb1uh6.ent

Chains and HETATMs selected: 
  ATOM        A

The following atoms are removed from PDB data on concern that they may have 
abnormally large fluctuations, because they interact with few atoms.
  ATOM      6  CG  MET A   1     -27.625 -10.927 -19.719  1.00  0.00           C  
  ATOM      7  SD  MET A   1     -28.695 -12.258 -20.241  1.00  0.00           S  
  ATOM      8  CE  MET A   1     -27.477 -13.417 -20.842  1.00  0.00           C  
  ATOM    148  CG  ARG A  20      16.715  16.548 -11.980  1.00  0.00           C  
  ATOM    149  CD  ARG A  20      16.950  17.642 -13.024  1.00  0.00           C  
  ATOM    150  NE  ARG A  20      17.598  18.813 -12.393  1.00  0.00           N  
  ATOM    151  CZ  ARG A  20      17.687  20.022 -12.965  1.00  0.00           C  
  ATOM    152  NH1 ARG A  20      17.170  20.225 -14.185  1.00  0.00           N  
  ATOM    153  NH2 ARG A  20      18.293  21.027 -12.318  1.00  0.00           N  
  ATOM    283  CG  LYS A  39       5.755  -6.967  13.315  1.00  0.00           C  
  ATOM    284  CD  LYS A  39       6.156  -8.414  13.607  1.00  0.00           C  
  ATOM    285  CE  LYS A  39       7.572  -8.703  13.107  1.00  0.00           C  
  ATOM    286  NZ  LYS A  39       7.555  -9.782  12.095  1.00  0.00           N  

= Normal mode analysis calculation =

No. of modes used in the calculation : All modes.

Parameters of potential energies:
  1-4 and 1-5 non-bonded interactions: E(d) = A*exp(-d(PDB)**2/B**2)(d-d(PDB))**2.
  Loop-closing potential:              E(d) = A*(d-d(PDB))**2.
    for a disulfide bond and one of the bonds in the DNA and RNA sugar ring.
  where d and d(PDB) are distances between atoms in calculation and in PDB data, 
  respectively.

  Interaction type   A       B      Cutoff distance (A)
    1-4             1.00    5.00      100.00
    1-5             1.00    5.00      100.00
    Loop-closing  100.00

Temperature adjustment by magnitude of fluctuation:
  Set to mean displacements of atoms       0.500 A

Animation
  No. of frames: 11
  Mean displacements (A):    0.50

Displacement vector
  Mean length of vectors (A):    3.00
