PDB file name : pdb1pxn.ent

Chains and HETATMs selected: 
  ATOM        A

The following atoms are removed from PDB data on concern that they may have 
abnormally large fluctuations, because they interact with few atoms.
  ATOM   1569  CG  ARG A 200      13.613  17.945  10.478  1.00 49.61           C  
  ATOM   1570  CD  ARG A 200      14.575  18.892   9.737  1.00 51.86           C  
  ATOM   1571  NE  ARG A 200      14.000  20.229   9.567  1.00 54.28           N  
  ATOM   1572  CZ  ARG A 200      14.541  21.204   8.840  1.00 55.32           C  
  ATOM   1573  NH1 ARG A 200      15.688  21.007   8.198  1.00 56.18           N  
  ATOM   1574  NH2 ARG A 200      13.930  22.380   8.749  1.00 55.60           N  

= Normal mode analysis calculation =

No. of modes used in the calculation : All modes.

Parameters of potential energies:
  1-4 and 1-5 non-bonded interactions: E(d) = A*exp(-d(PDB)**2/B**2)(d-d(PDB))**2.
  Loop-closing potential:              E(d) = A*(d-d(PDB))**2.
    for a disulfide bond and one of the bonds in the DNA and RNA sugar ring.
  where d and d(PDB) are distances between atoms in calculation and in PDB data, 
  respectively.

  Interaction type   A       B      Cutoff distance (A)
    1-4             1.00    5.00      100.00
    1-5             1.00    5.00      100.00
    Loop-closing  100.00

Temperature adjustment by magnitude of fluctuation:
  Set to mean displacements of atoms       0.500 A

Animation
  No. of frames: 11
  Mean displacements (A):    0.50

Displacement vector
  Mean length of vectors (A):    3.00
