PDB file name : pdb6o0l.ent

Chains and HETATMs selected: 
  ATOM        A

The following atoms are removed from PDB data on concern that they may have 
abnormally large fluctuations, because they interact with few atoms.
  ATOM     34  CG  ARG A  12      14.138   6.109   3.137  1.00 40.52           C  
  ATOM     35  CD  ARG A  12      15.588   5.979   3.567  1.00 38.48           C  
  ATOM     36  NE  ARG A  12      16.465   6.882   2.829  1.00 34.99           N  
  ATOM     37  CZ  ARG A  12      17.783   6.929   2.983  1.00 42.66           C  
  ATOM     38  NH1 ARG A  12      18.380   6.121   3.848  1.00 47.35           N  
  ATOM     39  NH2 ARG A  12      18.507   7.784   2.272  1.00 38.46           N  

= Normal mode analysis calculation =

No. of modes used in the calculation : All modes.

Parameters of potential energies:
  1-4 and 1-5 non-bonded interactions: E(d) = A*exp(-d(PDB)**2/B**2)(d-d(PDB))**2.
  Loop-closing potential:              E(d) = A*(d-d(PDB))**2.
    for a disulfide bond and one of the bonds in the DNA and RNA sugar ring.
  where d and d(PDB) are distances between atoms in calculation and in PDB data, 
  respectively.

  Interaction type   A       B      Cutoff distance (A)
    1-4             1.00    5.00      100.00
    1-5             1.00    5.00      100.00
    Loop-closing  100.00

Temperature adjustment by magnitude of fluctuation:
  Set to mean displacements of atoms       0.500 A

Animation
  No. of frames: 11
  Mean displacements (A):    0.50

Displacement vector
  Mean length of vectors (A):    3.00
