PDB file name : pdb2jzw.ent

Chains and HETATMs selected: 
  ATOM        A
  ATOM        B

The following atoms are removed from PDB data on concern that they may have 
abnormally large fluctuations, because they interact with few atoms.
  ATOM     21  CG  LYS A  14      -5.657  -7.882   2.034  1.00  0.00           C  
  ATOM     22  CD  LYS A  14      -4.932  -8.386   3.287  1.00  0.00           C  
  ATOM     23  CE  LYS A  14      -4.306  -9.759   3.029  1.00  0.00           C  
  ATOM     24  NZ  LYS A  14      -3.572 -10.249   4.210  1.00  0.00           N  
  ATOM     65  CG  LYS A  20     -12.818  -2.643   5.479  1.00  0.00           C  
  ATOM     66  CD  LYS A  20     -13.909  -1.599   5.731  1.00  0.00           C  
  ATOM     67  CE  LYS A  20     -14.811  -2.060   6.881  1.00  0.00           C  
  ATOM     68  NZ  LYS A  20     -15.879  -1.084   7.160  1.00  0.00           N  
  ATOM    177  CG  LYS A  34       3.481  11.705   1.430  1.00  0.00           C  
  ATOM    178  CD  LYS A  34       4.495  12.747   1.916  1.00  0.00           C  
  ATOM    179  CE  LYS A  34       3.794  14.027   2.383  1.00  0.00           C  
  ATOM    180  NZ  LYS A  34       4.768  15.038   2.833  1.00  0.00           N  
  ATOM    317  CG  ARG A  52      13.233  -7.108   5.318  1.00  0.00           C  
  ATOM    318  CD  ARG A  52      13.585  -6.787   6.774  1.00  0.00           C  
  ATOM    319  NE  ARG A  52      15.026  -6.939   7.013  1.00  0.00           N  
  ATOM    320  CZ  ARG A  52      15.637  -6.709   8.187  1.00  0.00           C  
  ATOM    321  NH1 ARG A  52      14.934  -6.313   9.258  1.00  0.00           N  
  ATOM    322  NH2 ARG A  52      16.962  -6.877   8.288  1.00  0.00           N  

= Normal mode analysis calculation =

No. of modes used in the calculation : All modes.

Parameters of potential energies:
  1-4 and 1-5 non-bonded interactions: E(d) = A*exp(-d(PDB)**2/B**2)(d-d(PDB))**2.
  Loop-closing potential:              E(d) = A*(d-d(PDB))**2.
    for a disulfide bond and one of the bonds in the DNA and RNA sugar ring.
  where d and d(PDB) are distances between atoms in calculation and in PDB data, 
  respectively.

  Interaction type   A       B      Cutoff distance (A)
    1-4             1.00    5.00      100.00
    1-5             1.00    5.00      100.00
    Loop-closing  100.00

Temperature adjustment by magnitude of fluctuation:
  Set to mean displacements of atoms       0.500 A

Animation
  No. of frames: 11
  Mean displacements (A):    0.50

Displacement vector
  Mean length of vectors (A):    3.00
