PDB file name : pdb2h1x.ent

Chains and HETATMs selected: 
  ATOM        A
  ATOM        B
  ATOM        C
  ATOM        D

The following atoms are removed from PDB data on concern that they may have 
abnormally large fluctuations, because they interact with few atoms.
  ATOM   3200  CG  LYS D  75      52.688 -25.368  23.297  1.00 31.91           C  
  ATOM   3201  CD  LYS D  75      53.739 -24.335  23.682  1.00 35.15           C  
  ATOM   3202  CE  LYS D  75      55.104 -24.686  23.087  1.00 37.59           C  
  ATOM   3203  NZ  LYS D  75      55.912 -25.579  23.980  1.00 38.58           N  

= Normal mode analysis calculation =

No. of modes used in the calculation : All modes.

Parameters of potential energies:
  1-4 and 1-5 non-bonded interactions: E(d) = A*exp(-d(PDB)**2/B**2)(d-d(PDB))**2.
  Loop-closing potential:              E(d) = A*(d-d(PDB))**2.
    for a disulfide bond and one of the bonds in the DNA and RNA sugar ring.
  where d and d(PDB) are distances between atoms in calculation and in PDB data, 
  respectively.

  Interaction type   A       B      Cutoff distance (A)
    1-4             1.00    5.00      100.00
    1-5             1.00    5.00      100.00
    Loop-closing  100.00

Temperature adjustment by magnitude of fluctuation:
  Set to mean displacements of atoms       0.500 A

Animation
  No. of frames: 11
  Mean displacements (A):    0.50

Displacement vector
  Mean length of vectors (A):    3.00
