PDB file name : pdb4cwq.ent

Chains and HETATMs selected: 
  ATOM        A

The following atoms are removed from PDB data on concern that they may have 
abnormally large fluctuations, because they interact with few atoms.
  ATOM    461  CG  LYS A  74     -18.010   7.178  33.881  1.00 40.69           C  
  ATOM    462  CD  LYS A  74     -19.498   6.903  34.090  1.00 45.01           C  
  ATOM    463  CE  LYS A  74     -19.726   5.790  35.106  1.00 47.84           C  
  ATOM    464  NZ  LYS A  74     -19.253   6.167  36.473  1.00 48.80           N  
  ATOM   1434  CG  ARG A 201     -14.200  21.103   3.121  1.00 32.32           C  
  ATOM   1435  CD  ARG A 201     -14.266  21.570   1.672  1.00 35.92           C  
  ATOM   1436  NE  ARG A 201     -13.189  22.488   1.293  1.00 37.81           N  
  ATOM   1437  CZ  ARG A 201     -13.030  22.954   0.054  1.00 38.66           C  
  ATOM   1438  NH1 ARG A 201     -13.864  22.565  -0.901  1.00 38.17           N  
  ATOM   1439  NH2 ARG A 201     -12.027  23.778  -0.239  1.00 38.19           N  
  ATOM   1497  CG  LYS A 208     -12.459   8.891   4.717  1.00 32.52           C  
  ATOM   1498  CD  LYS A 208     -13.510   9.494   3.788  1.00 34.60           C  
  ATOM   1499  CE  LYS A 208     -13.864   8.581   2.618  1.00 38.75           C  
  ATOM   1500  NZ  LYS A 208     -14.797   9.291   1.683  1.00 39.47           N  

= Normal mode analysis calculation =

No. of modes used in the calculation : All modes.

Parameters of potential energies:
  1-4 and 1-5 non-bonded interactions: E(d) = A*exp(-d(PDB)**2/B**2)(d-d(PDB))**2.
  Loop-closing potential:              E(d) = A*(d-d(PDB))**2.
    for a disulfide bond and one of the bonds in the DNA and RNA sugar ring.
  where d and d(PDB) are distances between atoms in calculation and in PDB data, 
  respectively.

  Interaction type   A       B      Cutoff distance (A)
    1-4             1.00    5.00      100.00
    1-5             1.00    5.00      100.00
    Loop-closing  100.00

Temperature adjustment by magnitude of fluctuation:
  Set to mean displacements of atoms       0.500 A

Animation
  No. of frames: 11
  Mean displacements (A):    0.50

Displacement vector
  Mean length of vectors (A):    3.00
