6QFY

CRYSTAL STRUCTURE OF PORCINE HEMAGGLUTINATING ENCEPHALOMYELITIS VIRUS SPIKE PROTEIN LECTIN DOMAIN

Summary for 6QFY

DescriptorSpike glycoprotein, N-ACETYL-D-GLUCOSAMINE, BETA-D-MANNOSE, ... (4 entities in total)
Functional Keywordssialic acid binding, beta-sandwich, viral spike protein, spike-ntd, viral protein
Biological sourcePorcine hemagglutinating encephalomyelitis virus
Total number of polymer chains2
Total molecular weight68215.63
Authors
Huizinga, E.G.,Bakkers, M.,Lang, Y. (deposition date: 2019-01-10, release date: 2019-02-06)
Primary citation
Hulswit, R.J.G.,Lang, Y.,Bakkers, M.J.G.,Li, W.,Li, Z.,Schouten, A.,Ophorst, B.,van Kuppeveld, F.J.M.,Boons, G.J.,Bosch, B.J.,Huizinga, E.G.,de Groot, R.J.
Human coronaviruses OC43 and HKU1 bind to 9-O-acetylated sialic acids via a conserved receptor-binding site in spike protein domain A.
Proc. Natl. Acad. Sci. U.S.A., 2019
PubMed: 30679277 (PDB entries with the same primary citation)
DOI: 10.1073/pnas.1809667116
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.97 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2572 0.9% 1.8% 4.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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More Biological unit images

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Molmil generated image of 6qfy
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (6qfy.pdb2.gz [102.15 KB])
Coordinate files for Biological unit (6qfy.pdb1.gz [102.77 KB])
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