6D7A

Structure of T. gondii PLP1 beta-rich domain

Summary for 6D7A

DescriptorPerforin-like protein 1, SODIUM ION (3 entities in total)
Functional Keywordspore forming protein, toxin, perforin-like protein, beta-prism, lipid binding protein
Biological sourceToxoplasma gondii
Total number of polymer chains2
Total molecular weight76212.08
Authors
Guerra, A.J.,Koropatkin, N.M.,Wawrzak, Z.,Bahr, C.M.E.,Carruthers, V.B. (deposition date: 2018-04-24, release date: 2018-05-16, Last modification date: 2019-01-16)
Primary citation
Guerra, A.J.,Zhang, O.,Bahr, C.M.E.,Huynh, M.H.,DelProposto, J.,Brown, W.C.,Wawrzak, Z.,Koropatkin, N.M.,Carruthers, V.B.
Structural basis of Toxoplasma gondii perforin-like protein 1 membrane interaction and activity during egress.
PLoS Pathog., 14:e1007476-e1007476, 2018
PubMed: 30513119 (PDB entries with the same primary citation)
DOI: 10.1371/journal.ppat.1007476
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (1.13 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.16520 0.5% 6.0%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 6d7a
no rotation
Molmil generated image of 6d7a
rotated about x axis by 90°
Molmil generated image of 6d7a
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 6d7a
no rotation
Molmil generated image of 6d7a
rotated about x axis by 90°
Molmil generated image of 6d7a
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (6d7a.pdb1.gz [139.92 KB])
Coordinate files for Biological unit (6d7a.pdb2.gz [139.18 KB])
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