6D5B

Structure of Caldicellulosiruptor danielii CBM3 module of glycoside hydrolase WP_045175321

Summary for 6D5B

Descriptorglycoside hydrolase WP_045175321, CALCIUM ION (3 entities in total)
Functional Keywordscbm3, carbohydrate binding, sugar binding protein
Biological sourceCaldicellulosiruptor sp. Wai35.B1 (Caldicellulosiruptor danielii)
Total number of polymer chains12
Total molecular weight227986.01
Authors
Alahuhta, P.M.,Lunin, V.V. (deposition date: 2018-04-19, release date: 2019-04-24)
Primary citation
Alahuhta, P.M.,Lunin, V.V.
Structure of Caldicellulosiruptor danielii CBM3 module of glycoside hydrolase WP_045175321
To Be Published,
Experimental method
X-RAY DIFFRACTION (2 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2482 0.7% 1.6% 0.2%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 6d5b
no rotation
Molmil generated image of 6d5b
rotated about x axis by 90°
Molmil generated image of 6d5b
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 6d5b
no rotation
Molmil generated image of 6d5b
rotated about x axis by 90°
Molmil generated image of 6d5b
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (6d5b.pdb1.gz [33.71 KB])
Coordinate files for Biological unit (6d5b.pdb10.gz [33.21 KB])
Coordinate files for Biological unit (6d5b.pdb12.gz [33.95 KB])
Coordinate files for Biological unit (6d5b.pdb11.gz [34.11 KB])
Coordinate files for Biological unit (6d5b.pdb2.gz [33.53 KB])
Coordinate files for Biological unit (6d5b.pdb4.gz [33.62 KB])
Coordinate files for Biological unit (6d5b.pdb3.gz [33.21 KB])
Coordinate files for Biological unit (6d5b.pdb5.gz [34.77 KB])
Coordinate files for Biological unit (6d5b.pdb6.gz [34 KB])
Coordinate files for Biological unit (6d5b.pdb7.gz [33.8 KB])
Coordinate files for Biological unit (6d5b.pdb8.gz [33.45 KB])
Coordinate files for Biological unit (6d5b.pdb9.gz [33.56 KB])