2X56

Yersinia Pestis Plasminogen Activator Pla (Native)

Summary for 2X56

• Entry DOI: 10.2210/pdb2x56/pdb
• Related: 2X4M 2X55
• Descriptor: COAGULASE/FIBRINOLYSIN, (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE (3 entities in total)
• Functional Keywords: transmembrane, aspartyl protease, cell outer membrane, omptin, protease, hydrolase
• Biological source: YERSINIA PESTIS
• Cellular location: Cell outer membrane ; Multi- pass membrane protein : P17811
• Total number of polymer chains: 1
• Total formula weight: 38171.52

Authors

Eren, E.,Murphy, M.,Goguen, J.,van den Berg, B. (deposition date: 2010-02-05, release date: 2010-07-28, Last modification date: 2024-05-01)

Primary citation

Eren, E.,Murphy, M.,Goguen, J.,van den Berg, B.
An Active Site Water Network in the Plasminogen Activator Pla from Yersinia Pestis
Structure, 18:809-, 2010

PubMed Abstract: The plasminogen activator Pla from Yersinia pestis is an outer membrane protease (omptin) that is important for the virulence of plague. Here, we present the high-resolution crystal structure of wild-type, enzymatically active Pla at 1.9 A. The structure shows a water molecule located between active site residues D84 and H208, which likely corresponds to the nucleophilic water. A number of other water molecules are present in the active site, linking residues important for enzymatic activity. The R211 sidechain in loop L4 is close to the nucleophilic water and possibly involved in the stabilization of the oxyanion intermediate. Subtle conformational changes of H208 result from the binding of lipopolysaccharide to the outside of the barrel, explaining the unusual dependence of omptins on lipopolysaccharide for activity. The Pla structure suggests a model for the interaction with plasminogen substrate and provides a more detailed understanding of the catalytic mechanism of omptin proteases.

PubMed: 20637417
DOI: 10.1016/J.STR.2010.03.013

Experimental method

X-RAY DIFFRACTION (2.3 Å)