Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6N9E

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11A, 2A23S Ribosomal RNApolymer2915948035.62Thermus thermophilus
21B, 2B5S Ribosomal RNApolymer12139188.42Thermus thermophilus
31D, 2D50S Ribosomal Protein L2polymer27630532.62Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60405)
In PDB
Thermus thermophilus
41E, 2E50S Ribosomal Protein L3polymer20622450.22Pfam (PF00297)
UniProt (by SIFTS) (Q5SHN8)
In PDB
Thermus thermophilus
51F, 2F50S Ribosomal Protein L4polymer21023271.92Pfam (PF00573)
UniProt (by SIFTS) (Q5SHN9)
In PDB
Thermus thermophilus
61G, 2G50S Ribosomal Protein L5polymer18221061.62Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (Q5SHQ0)
In PDB
Thermus thermophilus
71H, 2H50S Ribosomal Protein L6polymer18019568.92Pfam (PF00347)
UniProt (by SIFTS) (P0DOY8)
In PDB
Thermus thermophilus
81I, 2I50S Ribosomal Protein L9polymer14816422.22Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (Q5SLQ1)
In PDB
Thermus thermophilus
91N, 2N50S Ribosomal Protein L13polymer14015927.92Pfam (PF00572)
UniProt (by SIFTS) (P60488)
In PDB
Thermus thermophilus
101O, 2O50S Ribosomal Protein L14polymer12213323.62Pfam (PF00238)
UniProt (by SIFTS) (Q5SHP8)
In PDB
Thermus thermophilus
111P, 2P50S Ribosomal Protein L15polymer15016319.12Pfam (PF00828)
UniProt (by SIFTS) (Q5SHQ7)
In PDB
Thermus thermophilus
121Q, 2Q50S Ribosomal Protein L16polymer14115993.92Pfam (PF00252)
UniProt (by SIFTS) (P60489)
In PDB
Thermus thermophilus
131R, 2R50S Ribosomal Protein L17polymer11813750.12Pfam (PF01196)
UniProt (by SIFTS) (Q9Z9H5)
In PDB
Thermus thermophilus
141S, 2S50S Ribosomal Protein L18polymer11212639.82Pfam (PF00861)
UniProt (by SIFTS) (Q5SHQ4)
In PDB
Thermus thermophilus
151T, 2T50S Ribosomal Protein L19polymer14617188.82Pfam (PF01245)
UniProt (by SIFTS) (P60490)
In PDB
Thermus thermophilus
161U, 2U50S Ribosomal Protein L20polymer11813779.32Pfam (PF00453)
UniProt (by SIFTS) (P60491)
In PDB
Thermus thermophilus
171V, 2V50S Ribosomal Protein L21polymer10111069.22Pfam (PF00829)
UniProt (by SIFTS) (P60492)
In PDB
Thermus thermophilus
181W, 2W50S Ribosomal Protein L22polymer11312808.12Pfam (PF00237)
UniProt (by SIFTS) (Q5SHP3)
In PDB
Thermus thermophilus
191X, 2X50S Ribosomal Protein L23polymer9610759.82Pfam (PF00276)
UniProt (by SIFTS) (Q5SHP0)
In PDB
Thermus thermophilus
201Y, 2Y50S ribosomal protein L24polymer11012085.62UniProt (Q56435)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (Q5SHP9)
In PDB
Thermus thermophilus
211Z, 2Z50S ribosomal protein L25polymer20623238.62UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
UniProt (by SIFTS) (Q5SHZ1)
In PDB
Thermus thermophilusGeneral stress protein CTC
2210, 2050S ribosomal protein L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB
Thermus thermophilus
2311, 2150S ribosomal protein L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB
Thermus thermophilus
2412, 2250S ribosomal protein L29polymer728670.32UniProt (Q72I12)
Pfam (PF00831)
UniProt (by SIFTS) (Q5SHP6)
In PDB
Thermus thermophilus
2513, 2350S ribosomal protein L30polymer606799.12UniProt (P74909)
Pfam (PF00327)
UniProt (by SIFTS) (Q5SHQ6)
In PDB
Thermus thermophilus
2614, 2450S ribosomal protein L31polymer718300.52UniProt (Q72JR0)
Pfam (PF01197)
UniProt (by SIFTS) (Q5SJE1)
In PDB
Thermus thermophilus
2715, 2550S ribosomal protein L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB
Thermus thermophilus
2816, 2650S ribosomal protein L33polymer546632.92UniProt (Q72GW3)
Pfam (PF00471)
UniProt (by SIFTS) (P35871)
In PDB
Thermus thermophilus
2917, 2750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB
Thermus thermophilus
3018, 2850S Ribosomal Protein L35polymer657506.22Pfam (PF01632)
UniProt (by SIFTS) (Q5SKU1)
In PDB
Thermus thermophilus
3119, 2950S Ribosomal Protein L36polymer374435.42Pfam (PF00444)
UniProt (by SIFTS) (Q5SHR2)
In PDB
Thermus thermophilus
321a, 2a16S Ribosomal RNApolymer1521493864.62Thermus thermophilus
331b, 2b30S Ribosomal Protein S2polymer25629317.72Pfam (PF00318)
UniProt (by SIFTS) (P80371)
In PDB
Thermus thermophilus
341c, 2c30S Ribosomal Protein S3polymer23926751.12Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P80372)
In PDB
Thermus thermophilus
351d, 2d30S Ribosomal Protein S4polymer20924373.42Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P80373)
In PDB
Thermus thermophilus
361e, 2e30S Ribosomal Protein S5polymer16217583.42Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (Q5SHQ5)
In PDB
Thermus thermophilus
371f, 2f30S Ribosomal Protein S6polymer10111988.82Pfam (PF01250)
UniProt (by SIFTS) (Q5SLP8)
In PDB
Thermus thermophilus
381g, 2g30S Ribosomal Protein S7polymer15618051.02Pfam (PF00177)
UniProt (by SIFTS) (P17291)
In PDB
Thermus thermophilus
391h, 2h30S Ribosomal Protein S8polymer13815868.62Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB
Thermus thermophilus
401i, 2i30S ribosomal protein S9polymer12814410.62UniProt (P80374)
Pfam (PF00380)
In PDB
Thermus thermophilus
411j, 2j30S ribosomal protein S10polymer10511955.02UniProt (P80375)
Pfam (PF00338)
UniProt (by SIFTS) (Q5SHN7)
In PDB
Thermus thermophilus
421k, 2k30S ribosomal protein S11polymer12913737.92UniProt (P62654)
Pfam (PF00411)
UniProt (by SIFTS) (P80376)
In PDB
Thermus thermophilus
431l, 2l30S ribosomal protein S12polymer13214683.52UniProt (P17293)
Pfam (PF00164)
UniProt (by SIFTS) (Q5SHN3)
In PDB
Thermus thermophilus
441m, 2m30S ribosomal protein S13polymer12614338.92UniProt (P62655)
Pfam (PF00416)
UniProt (by SIFTS) (P80377)
In PDB
Thermus thermophilus
451n, 2n30S ribosomal protein S14 type Zpolymer617158.72UniProt (P24320)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB
Thermus thermophilus
461o, 2o30S ribosomal protein S15polymer8910578.42UniProt (P80378)
Pfam (PF00312)
UniProt (by SIFTS) (Q5SJ76)
In PDB
Thermus thermophilus
471p, 2p30S ribosomal protein S16polymer8810410.02UniProt (P62238)
Pfam (PF00886)
UniProt (by SIFTS) (Q5SJH3)
In PDB
Thermus thermophilus
481q, 2q30S ribosomal protein S17polymer10512325.72UniProt (P0DOY7)
Pfam (PF00366)
In PDB
Thermus thermophilus
491r, 2r30S ribosomal protein S18polymer8810258.32UniProt (P62659)
Pfam (PF01084)
UniProt (by SIFTS) (Q5SLQ0)
In PDB
Thermus thermophilus
501s, 2s30S Ribosomal Protein S19polymer9310605.52Pfam (PF00203)
UniProt (by SIFTS) (Q5SHP2)
In PDB
Thermus thermophilus
511t, 2t30S Ribosomal Protein S20polymer10611736.12Pfam (PF01649)
UniProt (by SIFTS) (P80380)
In PDB
Thermus thermophilus
521u, 2u30S ribosomal protein Thxpolymer273350.02UniProt (P62612)
Pfam (PF17070)
UniProt (by SIFTS) (Q5SIH3)
In PDB
Thermus thermophilus
531v, 2vmRNApolymer247804.72Enterobacteria phage T4
541w, 2wCC-Pmnpolymer31098.92Escherichia coli
551x, 2xP-site tRNA, Deacylated Initiator Methionyl-tRNApolymer7724846.92Escherichia coli
561a, 2A, 1A, 2E, 2a...MAGNESIUM IONnon-polymer24.31156Chemie (MG)
5729, 2n, 1Y, 2Y, 14...ZINC IONnon-polymer65.412Chemie (ZN)
582d, 1dIRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
59waterwater18.0125Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains110
Total formula weight4404489.9
Non-Polymers*Number of molecules1170
Total formula weight29584.8
All*Total formula weight4434074.7
*Water molecules are not included.

217705

數據於2024-03-27公開中

PDB statisticsPDBj update infoContact PDBjnumon