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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6H8K

Crystal structure of a variant (Q133C in PSST) of Yarrowia lipolytica complex I

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11NADH-ubiquinone oxidoreductase chain 1polymer33537702.51UniProt (Q9B6E8)
Pfam (PF00146)
In PDB		Yarrowia lipolytica (Candida lipolytica)NADH dehydrogenase subunit 1
22NADH-ubiquinone oxidoreductase chain 2,NADH dehydrogenase subunit 2polymer43446373.01UniProt (Q9B6C8)
Pfam (PF00361)
In PDB		Yarrowia lipolytica (Candida lipolytica)NADH dehydrogenase subunit 2
33NADH-ubiquinone oxidoreductase chain 3polymer11012351.81UniProt (Q9B6C7)
Pfam (PF00507)
In PDB		Yarrowia lipolytica (Candida lipolytica)NADH dehydrogenase subunit 3
44NADH-ubiquinone oxidoreductase chain 4polymer47046528.71UniProt (Q9B6D6)
Pfam (PF00361)
In PDB		Yarrowia lipolytica (Candida lipolytica)NADH dehydrogenase subunit 4
55NADH-ubiquinone oxidoreductase chain 5polymer61661395.51UniProt (Q9B6D3)
Pfam (PF00662)
Pfam (PF00361)
In PDB		Yarrowia lipolytica (Candida lipolytica)
66NADH-ubiquinone oxidoreductase chain 6polymer18420175.41UniProt (Q9B6E9)
Pfam (PF00499)
In PDB		Yarrowia lipolytica (Candida lipolytica)NADH dehydrogenase subunit 6
7ANUAM proteinpolymer63456416.91UniProt (Q9UUU3)
Pfam (PF13510)
Pfam (PF10588)
In PDB		Yarrowia lipolytica (Candida lipolytica)
8BNADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialpolymer37034323.21UniProt (Q9UUU2)
Pfam (PF01512)
Pfam (PF10531)
Pfam (PF10589)
In PDB		Yarrowia lipolytica (Candida lipolytica)
9CNUCM proteinpolymer38343255.61UniProt (Q9UUU1)
Pfam (PF00346)
In PDB		Yarrowia lipolytica (Candida lipolytica)
10ENUEM proteinpolymer19516613.41Yarrowia lipolytica (Candida lipolytica)
11GNUGM proteinpolymer13313497.81UniProt (Q9UUU0)
Pfam (PF00329)
In PDB		Yarrowia lipolytica (Candida lipolytica)
12HSubunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer15413304.11Yarrowia lipolytica (Candida lipolytica)
13ISubunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer14014427.01UniProt (Q9UUT8)
Pfam (PF12838)
In PDB		Yarrowia lipolytica (Candida lipolytica)Subunit NUIM of protein NADH:Ubiquinone oxidoreductase
14KSubunit NUKM of protein NADH:Ubiquinone Oxidoreductase (Complex I)polymer14716513.21UniProt (Q9UUT7)
Pfam (PF01058)
In PDB		Yarrowia lipolytica (Candida lipolytica)Subunit NUKM of protein NADH:Ubiquinone oxidoreductase
15LNADH-ubiquinone oxidoreductase chain 4Lpolymer798741.61UniProt (Q9B6D4)
Pfam (PF00420)
In PDB		Yarrowia lipolytica (Candida lipolytica)NADH dehydrogenase subunit 4L
16Z, rUnknown polypeptidepolymer171464.82Yarrowia lipolytica (Candida lipolytica)
17Y, AFUnknown polypeptidepolymer403422.22Yarrowia lipolytica (Candida lipolytica)
18UUnknown polypeptidepolymer10869.11Yarrowia lipolytica (Candida lipolytica)
19XUnknown polypeptidepolymer574869.01Yarrowia lipolytica (Candida lipolytica)
20WUnknown polypeptidepolymer544613.71Yarrowia lipolytica (Candida lipolytica)
21VUnknown polypeptidepolymer635379.61Yarrowia lipolytica (Candida lipolytica)
22T, m, AIUnknown polypeptidepolymer201720.13Yarrowia lipolytica (Candida lipolytica)
23S, AJ, ALUnknown polypeptidepolymer191635.03Yarrowia lipolytica (Candida lipolytica)
24RUnknown polypeptidepolymer504273.31Yarrowia lipolytica (Candida lipolytica)
25QUnknown polypeptidepolymer705975.41Yarrowia lipolytica (Candida lipolytica)
26PUnknown polypeptidepolymer282401.01Yarrowia lipolytica (Candida lipolytica)
27F, f, AC, AH, AMUnknown polypeptidepolymer181549.95Yarrowia lipolytica (Candida lipolytica)
28O, lUnknown polypeptidepolymer252145.62Yarrowia lipolytica (Candida lipolytica)
29MUnknown polypeptidepolymer514358.41Yarrowia lipolytica (Candida lipolytica)
30DUnknown polypeptidepolymer302571.21Yarrowia lipolytica (Candida lipolytica)
31JUnknown polypeptidepolymer695890.31Yarrowia lipolytica (Candida lipolytica)
32NUnknown polypeptidepolymer151294.61Yarrowia lipolytica (Candida lipolytica)
33a, iUnknown polypeptidepolymer262230.72Yarrowia lipolytica (Candida lipolytica)
34bUnknown polypeptidepolymer221890.31Yarrowia lipolytica (Candida lipolytica)
35c, g, AE, AK, AOUnknown polypeptidepolymer9784.05Yarrowia lipolytica (Candida lipolytica)
36d, o, AB, ANUnknown polypeptidepolymer161379.74Yarrowia lipolytica (Candida lipolytica)
37e, w, zUnknown polypeptidepolymer131124.43Yarrowia lipolytica (Candida lipolytica)
38hUnknown polypeptidepolymer474017.91Yarrowia lipolytica (Candida lipolytica)
39jUnknown polypeptidepolymer484103.01Yarrowia lipolytica (Candida lipolytica)
40k, sUnknown polypeptidepolymer231975.42Yarrowia lipolytica (Candida lipolytica)
41n, qUnknown polypeptidepolymer363081.82Yarrowia lipolytica (Candida lipolytica)
42pUnknown polypeptidepolymer766486.01Yarrowia lipolytica (Candida lipolytica)
43tUnknown polypeptidepolymer453847.71Yarrowia lipolytica (Candida lipolytica)
44uUnknown polypeptidepolymer322741.41Yarrowia lipolytica (Candida lipolytica)
45v, yUnknown polypeptidepolymer11954.22Yarrowia lipolytica (Candida lipolytica)
46x, AGUnknown polypeptidepolymer8698.92Yarrowia lipolytica (Candida lipolytica)
47AAUnknown polypeptidepolymer584954.11Yarrowia lipolytica (Candida lipolytica)
48ADUnknown polypeptidepolymer393337.11Yarrowia lipolytica (Candida lipolytica)
49A, HFE2/S2 (INORGANIC) CLUSTERnon-polymer175.82Chemie (FES)
50I, K, A, BIRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
Sequence modifications
2: 1 - 84 (UniProt: Q9B6C8)
2: 97 - 119 (PDB: 6H8K)
2: 120 - 250 (UniProt: Q9B6C8)
2: 251 - 260 (PDB: 6H8K)
2: 261 - 328 (UniProt: Q9B6C8)
2: 329 - 359 (PDB: 6H8K)
2: 360 - 415 (UniProt: Q9B6C8)
2: 416 - 479 (PDB: 6H8K)
4: 1 - 135 (PDB: 6H8K)
4: 136 - 325 (UniProt: Q9B6D6)
4: 326 - 361 (PDB: 6H8K)
4: 362 - 408 (UniProt: Q9B6D6)
4: 409 - 451 (PDB: 6H8K)
4: 452 - 471 (UniProt: Q9B6D6)
4: 472 - 486 (PDB: 6H8K)
5: 1 - 70 (PDB: 6H8K)
5: 71 - 191 (UniProt: Q9B6D3)
5: 192 - 204 (PDB: 6H8K)
5: 205 - 250 (UniProt: Q9B6D3)
5: 251 - 294 (PDB: 6H8K)
5: 295 - 399 (UniProt: Q9B6D3)
5: 400 - 406 (PDB: 6H8K)
5: 407 - 426 (UniProt: Q9B6D3)
5: 427 - 440 (PDB: 6H8K)
5: 441 - 456 (UniProt: Q9B6D3)
5: 457 - 540 (PDB: 6H8K)
5: 541 - 565 (UniProt: Q9B6D3)
5: 566 - 577 (PDB: 6H8K)
5: 578 - 616 (UniProt: Q9B6D3)
6: 2 - 10 (PDB: 6H8K)
6: 11 - 185 (UniProt: Q9B6E9)
A: 36 - 68 (PDB: 6H8K)
A: 69 - 148 (UniProt: Q9UUU3)
A: 152 - 181 (PDB: 6H8K)
A: 183 - 199 (UniProt: Q9UUU3)
A: 200 - 737 (PDB: 6H8K)
B: 43 - 87 (PDB: 6H8K)
B: 92 - 109 (UniProt: Q9UUU2)
B: 115 - 120 (PDB: 6H8K)
B: 125 - 155 (UniProt: Q9UUU2)
B: 159 - 380 (PDB: 6H8K)
B: 381 - 434 (UniProt: Q9UUU2)
B: 432 - 461 (PDB: 6H8K)
G: 69 - 90 (UniProt: Q9UUU0)
G: 91 - 162 (PDB: 6H8K)
G: 163 - 209 (UniProt: Q9UUU0)
I: 72 - 92 (UniProt: Q9UUT8)
I: 103 - 120 (PDB: 6H8K)
I: 128 - 196 (UniProt: Q9UUT8)
I: 194 - 250 (PDB: 6H8K)
K: 59 - 205 (UniProt: Q9UUT7)
PDBExternal DatabaseDetails
Cys 133Gln 133engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains73
Total formula weight578066.4
Non-Polymers*Number of molecules8
Total formula weight2461.5
All*Total formula weight580527.8
*Water molecules are not included.

218500

数据于2024-04-17公开中

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