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6DHE

RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom resolution

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, aPhotosystem II protein D1 1polymer33437059.32UniProt (P0A444)
Pfam (PF00124)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII D1 protein 1,Photosystem II Q(B) protein 1
2B, bPhotosystem II CP47 reaction center proteinpolymer50556096.82UniProt (Q8DIQ1)
Pfam (PF00421)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII 47 kDa protein,Protein CP-47
3C, cPhotosystem II CP43 reaction center proteinpolymer45149207.32UniProt (Q8DIF8)
Pfam (PF00421)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII 43 kDa protein,Protein CP-43
4D, dPhotosystem II D2 proteinpolymer34138275.82UniProt (Q8CM25)
Pfam (PF00124)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII D2 protein,Photosystem II Q(A) protein
5E, eCytochrome b559 subunit alphapolymer829378.62UniProt (Q8DIP0)
Pfam (PF00283)
Pfam (PF00284)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII reaction center subunit V
6F, fCytochrome b559 subunit betapolymer343868.62UniProt (Q8DIN9)
Pfam (PF00283)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII reaction center subunit VI
7H, hPhotosystem II reaction center protein Hpolymer657227.62UniProt (Q8DJ43)
Pfam (PF00737)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII-H
8I, iPhotosystem II reaction center protein Ipolymer364196.02UniProt (Q8DJZ6)
Pfam (PF02532)
In PDB
Thermosynechococcus elongatusPSII-I,PSII 4.4 kDa protein
9J, jPhotosystem II reaction center protein Jpolymer363627.32UniProt (P59087)
Pfam (PF01788)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII-J
10K, kPhotosystem II reaction center protein Kpolymer374101.92UniProt (Q9F1K9)
Pfam (PF02533)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII-K
11L, lPhotosystem II reaction center protein Lpolymer374299.02UniProt (Q8DIN8)
Pfam (PF02419)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII-L
12M, mPhotosystem II reaction center protein Mpolymer333706.32UniProt (Q8DHA7)
Pfam (PF05151)
In PDB
Thermosynechococcus elongatusPSII-M
13O, oPhotosystem II manganese-stabilizing polypeptidepolymer24426651.72UniProt (P0A431)
Pfam (PF01716)
In PDB
Thermosynechococcus elongatus (strain BP-1)MSP
14T, tPhotosystem II reaction center protein Tpolymer303648.42UniProt (Q8DIQ0)
Pfam (PF01405)
In PDB
Thermosynechococcus elongatusPSII-Tc
15U, uPhotosystem II 12 kDa extrinsic proteinpolymer9710966.32UniProt (Q9F1L5)
Pfam (PF06514)
In PDB
Thermosynechococcus elongatus (strain BP-1)PS II complex 12 kDa extrinsic protein,PSII-U
16V, vCytochrome c-550polymer13715148.32UniProt (P0A386)
Pfam (PF14495)
In PDB
Thermosynechococcus elongatus (strain BP-1)Cytochrome c-549,Cytochrome c550,Low-potential cytochrome c
17Y, yPhotosystem II reaction center protein Ycf12polymer303228.02UniProt (Q8DJI1)
Pfam (PF05969)
In PDB
Thermosynechococcus elongatus (strain BP-1)
18X, xPhotosystem II reaction center X proteinpolymer383990.82UniProt (Q9F1R6)
Pfam (PF06596)
In PDB
Thermosynechococcus elongatus (strain BP-1)
19Z, zPhotosystem II reaction center protein Zpolymer626766.22UniProt (Q8DHJ2)
Pfam (PF01737)
In PDB
Thermosynechococcus elongatus (strain BP-1)PSII-Z
20R, rPhotosystem II protein Ypolymer343859.72UniProt (Q8DKM3)
Pfam (PF06298)
In PDB
Thermosynechococcus elongatus (strain BP-1)
21a, AFE (II) IONnon-polymer55.82Chemie (FE2)
22a, ACHLORIDE IONnon-polymer35.54Chemie (CL)
23b, c, B, D, C...CHLOROPHYLL Anon-polymer893.570Chemie (CLA)
24D, a, d, APHEOPHYTIN Anon-polymer871.24Chemie (PHO)
25D, c, k, b, t...(6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotenenon-polymer536.912Chemie (8CT)
26D, a, A, d2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEnon-polymer749.24Chemie (PL9)
27d, D, c, b, B...1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDEnon-polymer787.213Chemie (LMG)
28A, B, f, D, a...1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLnon-polymer795.18Chemie (SQD)
29A, h, c, o, H...DIGALACTOSYL DIACYL GLYCEROL (DGDG)non-polymer949.310Chemie (DGD)
30A, aCA-MN4-O5 CLUSTERnon-polymer339.82Chemie (OEX)
31Y, h, c, b, a...BETA-CAROTENEnon-polymer536.910Chemie (BCR)
32C, T, B, d, X...UNKNOWN LIGANDnon-polymer723.031Chemie (UNL)
33e, D, l, E, L...1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLEnon-polymer723.010Chemie (LHG)PSII-Z
34D, aBICARBONATE IONnon-polymer61.02Chemie (BCT)
35e, FPROTOPORPHYRIN IX CONTAINING FEnon-polymer616.52Chemie (HEM)
36V, vHEME Cnon-polymer618.52Chemie (HEC)
37waterwater18.02021Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains40
Total formula weight590607.7
Non-Polymers*Number of molecules186
Total formula weight140091.0
All*Total formula weight730698.7
*Water molecules are not included.

217705

건을2024-03-27부터공개중

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