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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6C0F

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNApolymer33951097172.61GenBank (259147931)Saccharomyces cerevisiae BY4741
225.8S rRNApolymer15850682.91GenBank (1267176496)Saccharomyces cerevisiae BY4741
36ITS2polymer23274308.41GenBank (1104417410)Saccharomyces cerevisiae BY4741
4ARibosome biogenesis protein NSA1polymer46351982.51UniProt (P53136)
In PDB		Saccharomyces cerevisiae BY4741NOP7-associated protein 1
5B60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
6C60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae BY4741L2,Large ribosomal subunit protein uL4-A,RP2,YL2
7DProtein MAK16polymer30635754.61UniProt (P10962)
Pfam (PF01778)
Pfam (PF04874)
In PDB		Saccharomyces cerevisiae BY4741Maintenance of killer protein 16
8E60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae BY4741L17,Large ribosomal subunit protein eL6-A,RP18,YL16
9F60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae BY4741L6,Large ribosomal subunit protein uL30-A,RP11,YL8
10G60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae BY4741L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
11IRibosome production factor 1polymer29535184.41UniProt (P38805)
Pfam (PF04427)
In PDB		Saccharomyces cerevisiae BY4741Ribosome biogenesis protein RPF1
12KProteasome-interacting protein CIC1polymer37642596.71UniProt (P38779)
Pfam (PF00687)
In PDB		Saccharomyces cerevisiae BY4741Core interacting component 1
13L60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL13-A
14M60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL14-A
15N60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae BY4741L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
16O60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae BY4741L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
17P60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae BY4741L20A,Large ribosomal subunit protein uL22-A,YL17
18Q60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL18-A,RP28
19S60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae BY4741L18a,Large ribosomal subunit protein eL20-A
20V60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae BY4741L17a,Large ribosomal subunit protein uL14-A,YL32
21WNucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
In PDB		Saccharomyces cerevisiae BY4741
22Y60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae BY4741L33,Large ribosomal subunit protein uL24-A,YL33
237Nucleolar protein 16polymer23126954.41UniProt (P40007)
Pfam (PF09420)
In PDB		Saccharomyces cerevisiae BY4741
248Ribosomal RNA-processing protein 14polymer43450599.91UniProt (P36080)
Pfam (PF15459)
Pfam (PF04935)
In PDB		Saccharomyces cerevisiae BY4741Ribosome biogenesis protein RRP14
25bRibosome biogenesis protein BRX1polymer29133079.91Pfam (PF04427)
UniProt (by SIFTS) (Q08235)
In PDB		Saccharomyces cerevisiae BY4741
26e60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL32
27f60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae BY4741L37,Large ribosomal subunit protein eL33-A,RP47,YL37
28h60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL29-A
29i60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae BY4741L39,Large ribosomal subunit protein eL36-A,YL39
30j60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae BY4741L43,Large ribosomal subunit protein eL37-A,YL35,YP55
31xBrx1-associated peptidepolymer282401.01Saccharomyces cerevisiae BY4741
32mrRNA-processing protein EBP2polymer746315.81Saccharomyces cerevisiae BY4741EBNA1-binding protein homolog
33nPescadillo homologpolymer60569984.11UniProt (P53261)
Pfam (PF06732)
Pfam (PF16589)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 7,Ribosomal RNA-processing protein 13
34oRibosome biogenesis protein 15polymer22025499.21UniProt (P53927)
Pfam (PF00076)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 15
35pATP-dependent RNA helicase HAS1polymer50556798.31UniProt (Q03532)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF13959)
In PDB		Saccharomyces cerevisiae BY4741Helicase associated with SET1 protein 1
36qProtein MAK11polymer28524272.81Saccharomyces cerevisiae BY4741Maintenance of killer protein 11
37sRibosome biogenesis protein ERB1polymer80789176.81Pfam (PF08145)
Pfam (PF00400)
UniProt (by SIFTS) (Q04660)
In PDB		Saccharomyces cerevisiae BY4741Eukaryotic ribosome biogenesis protein 1
38tRibosome biogenesis protein RLP7polymer32236621.11UniProt (P40693)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae BY4741Ribosomal protein L7-like
39uRibosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae BY4741Ribosomal protein L24-like
40vRibosome biogenesis protein SSF1polymer45351861.21UniProt (P38789)
Pfam (PF04427)
In PDB		Saccharomyces cerevisiae BY4741
41wRibosomal RNA-processing protein 15polymer25028268.51UniProt (Q06511)
Pfam (PF07890)
In PDB		Saccharomyces cerevisiae BY4741
42yEukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
In PDB		Saccharomyces cerevisiae BY4741eIF-6
43zRibosomal RNA-processing protein 1polymer27833250.51UniProt (P35178)
Pfam (PF05997)
In PDB		Saccharomyces cerevisiae BY4741
44D, j, uZINC IONnon-polymer65.43Chemie (ZN)
Sequence modifications
1: 1 - 3396 (GenBank: 259147931)
PDBExternal DatabaseDetails
-U 433869deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains43
Total formula weight2443597.6
Non-Polymers*Number of molecules3
Total formula weight196.2
All*Total formula weight2443793.8
*Water molecules are not included.

218853

건을2024-04-24부터공개중

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