6BG5
Structure of 1-(benzo[d][1,3]dioxol-5-ylmethyl)-1-(1-propylpiperidin-4-yl)-3-(3-(trifluoromethyl)phenyl)urea bound to DCN1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Endolysin, DCN1-like protein 1 chimera | polymer | 384 | 44307.4 | 1 | UniProt (P00720) UniProt (Q96GG9) Pfam (PF00959) Pfam (PF03556) In PDB | Enterobacteria phage T4 | DCUN1 domain-containing protein 1,Defective in cullin neddylation protein 1-like protein 1,Squamous cell carcinoma-related oncogene,Lysis protein,Lysozyme,Muramidase |
2 | A | N-[(2H-1,3-benzodioxol-5-yl)methyl]-N-(1-propylpiperidin-4-yl)-N'-[3-(trifluoromethyl)phenyl]urea | non-polymer | 463.5 | 1 | Chemie (DQD) | |||
3 | water | water | 18.0 | 692 | Chemie (HOH) |
Sequence modifications
A: 1 - 164 (UniProt: P00720)
A: 1062 - 1259 (UniProt: Q96GG9)
PDB | External Database | Details |
---|---|---|
Met -21 | - | initiating methionine |
Gly -20 | - | expression tag |
Ser -19 | - | expression tag |
Ser -18 | - | expression tag |
His -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
Ser -11 | - | expression tag |
Gln -10 | - | expression tag |
Asp -9 | - | expression tag |
Leu -8 | - | expression tag |
Glu -7 | - | expression tag |
Asn -6 | - | expression tag |
Leu -5 | - | expression tag |
Tyr -4 | - | expression tag |
Phe -3 | - | expression tag |
Gln -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
Gly 12 | Arg 12 | conflict |
Thr 54 | Cys 54 | conflict |
Ala 97 | Cys 97 | conflict |
Arg 137 | Ile 137 | conflict |
Thr 146 | Ala 146 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 44307.4 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 463.5 | |
All* | Total formula weight | 44770.8 |