5DGY
Crystal structure of rhodopsin bound to visual arrestin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D | Endolysin,Rhodopsin,S-arrestin | polymer | 906 | 100861.1 | 4 | UniProt (P00720) UniProt (P08100) UniProt (P20443) Pfam (PF00959) Pfam (PF10413) Pfam (PF00001) Pfam (PF00339) Pfam (PF02752) In PDB | Enterobacteria phage T4 | Lysis protein,Lysozyme,Muramidase,Opsin-2,48 kDa protein,Retinal S-antigen,S-AG,Rod photoreceptor arrestin |
Sequence modifications
A, B, C, D: -159 - 0 (UniProt: P00720)
A, B, C, D: 1 - 994 (UniProt: P08100)
A, B, C, D: 1010 - 1392 (UniProt: P20443)
| PDB | External Database | Details |
|---|---|---|
| Gly -149 | Arg 12 | engineered mutation |
| Thr -107 | Cys 54 | engineered mutation |
| Ala -64 | Cys 97 | engineered mutation |
| Arg -24 | Ile 137 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Cys 2 | Asn 2 | engineered mutation |
| Gln 113 | Glu 113 | engineered mutation |
| Tyr 257 | Met 257 | engineered mutation |
| Cys 282 | Asn 282 | engineered mutation |
| Ala 995 | - | linker |
| Ala 996 | - | linker |
| Ala 997 | - | linker |
| Gly 998 | - | linker |
| Ser 999 | - | linker |
| Ala 1000 | - | linker |
| Gly 1001 | - | linker |
| Ser 1002 | - | linker |
| Ala 1003 | - | linker |
| Gly 1004 | - | linker |
| Ser 1005 | - | linker |
| Ala 1006 | - | linker |
| Gly 1007 | - | linker |
| Ser 1008 | - | linker |
| Ala 1009 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Ala 1374 | Leu 374 | engineered mutation |
| Ala 1375 | Val 375 | engineered mutation |
| Ala 1376 | Phe 376 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 403444.4 | |
| All* | Total formula weight | 403444.4 |
