4YLO
E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA
エンティティ
Entity ID | 鎖名 | 説明 | 種類 | 鎖長 | 化学式量 | 分子数 | データベース名(アクセス番号) | 由来する生物種 | エンティティの一般名 |
1 | A, B, G, H, M... | DNA-directed RNA polymerase subunit alpha | polymer | 242 | 26899.6 | 6 | UniProt (A7ZSI4) Pfam (PF01193) Pfam (PF01000) In PDB | Escherichia coli | RNAP subunit alpha, RNA polymerase subunit alpha, Transcriptase subunit alpha |
2 | C, I, O | DNA-directed RNA polymerase subunit beta | polymer | 1342 | 150820.9 | 3 | UniProt (A7ZUK1) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF10385) Pfam (PF00562) Pfam (PF04560) In PDB | Escherichia coli | RNAP subunit beta, RNA polymerase subunit beta, Transcriptase subunit beta |
3 | D, J, P | DNA-directed RNA polymerase subunit beta' | polymer | 1407 | 155366.8 | 3 | UniProt (A7ZUK2) Pfam (PF04997) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) UniProt (by SIFTS) (P0A8T7) In PDB | Escherichia coli | RNAP subunit beta', RNA polymerase subunit beta', Transcriptase subunit beta' |
4 | E, K, Q | DNA-directed RNA polymerase subunit omega | polymer | 90 | 10118.4 | 3 | UniProt (A7ZTK1) Pfam (PF01192) In PDB | Escherichia coli | RNAP omega subunit, RNA polymerase omega subunit, Transcriptase subunit omega |
5 | F, L, R | RNA polymerase sigma factor RpoD | polymer | 628 | 72206.3 | 3 | UniProt (P00579) Pfam (PF03979) Pfam (PF00140) Pfam (PF04546) Pfam (PF04542) Pfam (PF04539) Pfam (PF04545) In PDB | Escherichia coli | Sigma-70 |
6 | 1, 4, 7 | NT strand DNA (49-MER) | polymer | 49 | 15024.6 | 3 | synthetic construct | ||
7 | 2, 5, 8 | T strand DNA (49-MER) | polymer | 49 | 15233.8 | 3 | synthetic construct | ||
8 | 3, 6, 9 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | polymer | 4 | 1440.8 | 3 | synthetic construct | ||
9 | C, J, P | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
10 | D, J, P | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) |
配列変更
A, B, G, H, M, N: 1 - 235 (UniProt: A7ZSI4)
F, L, R: 1 - 613 (UniProt: P00579)
PDB | 外部データベース | 詳細 |
---|---|---|
Ala -6 | - | expression tag |
His -5 | - | expression tag |
His -4 | - | expression tag |
His -3 | - | expression tag |
His -2 | - | expression tag |
His -1 | - | expression tag |
His 0 | - | expression tag |
PDB | 外部データベース | 詳細 |
---|---|---|
Met -14 | - | expression tag |
Arg -13 | - | expression tag |
Gly -12 | - | expression tag |
Ser -11 | - | expression tag |
His -10 | - | expression tag |
His -9 | - | expression tag |
His -8 | - | expression tag |
His -7 | - | expression tag |
His -6 | - | expression tag |
His -5 | - | expression tag |
Thr -4 | - | expression tag |
Asp -3 | - | expression tag |
Gln -2 | - | expression tag |
Phe -1 | - | expression tag |
Thr 0 | - | expression tag |
配列ビューア
非対称単位の内容
タンパク質・ 核酸鎖 | 鎖の数 | 27 |
化学式量合計 | 1422031.8 | |
タンパク質・ 核酸・ 糖鎖以外* | 分子数 | 9 |
化学式量合計 | 465.4 | |
全て* | 化学式量合計 | 1422497.2 |