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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V6M

Structure of the ribosome-SecYE complex in the membrane environment

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S RIBOSOMAL RNApolymer1542499690.01GenBank (J01695)Escherichia coli
2AXmRNApolymer113442.11Escherichia coli
3AVFtsQ nascent chainpolymer7724876.81GenBank (AP012030)Escherichia coli DH1 (FtsQ nascent chain)
4AZCell division protein FtsQpolymer9811085.81UniProt (Q8X9Y5)
Pfam (PF08478)
In PDB		Escherichia coli O157:H7Cell division protein; ingrowth of wall at septum
5A0, A1Apolipoprotein A-Ipolymer20023309.42UniProt (P02647)
Pfam (PF01442)
In PDB		Homo sapiensApo-AI, ApoA-I, Apolipoprotein A1, Apolipoprotein A-I(1-242)
6AB30S ribosomal protein S2polymer24026650.51UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli K-12
7AC30S ribosomal protein S3polymer23225900.11UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli K-12
8AD30S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli K-12
9AE30S ribosomal protein S5polymer16617498.21UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli K-12
10AF30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli K-1230S ribosomal protein S6, fully modified isoform, 30S ribosomal protein S6, non-modified isoform
11AG30S ribosomal protein S7polymer17819924.01UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli K-12
12AH30S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli K-12
13AI30S ribosomal protein S9polymer12914755.11UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli K-12
14AJ30S ribosomal protein S10polymer10311755.61UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli K-12
15AK30S ribosomal protein S11polymer12813739.81UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli K-12
16AL30S ribosomal protein S12polymer12313637.01UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli K-12
17AM30S ribosomal protein S13polymer11712997.31UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli K-12
18AN30S ribosomal protein S14polymer10011475.41UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli K-12
19AO30S ribosomal protein S15polymer8810188.71UniProt (P0A7S3)
In PDB		Escherichia coli K-12
20AP30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli K-12
21AQ30S ribosomal protein S17polymer839593.31UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli K-12
22AR30S ribosomal protein S18polymer748874.31UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli K-12
23AS30S ribosomal protein S19polymer9110324.21UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli K-12
24AT30S ribosomal protein S20polymer869577.31UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli K-12
25AU30S ribosomal protein S21polymer708392.81UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli K-12
26B75S RIBOSOMAL RNApolymer12038790.11GenBank (AP012030)Escherichia coli DH1
27B823S RIBOSOMAL RNApolymer2904941612.41GenBank (AP012030)Escherichia coli DH1
28BAPreprotein translocase secY subunitpolymer43547669.31UniProt (Q0TCG1)
In PDB		Escherichia coli 536
29BBPreprotein translocase secE subunitpolymer11612623.31UniProt (Q0TA84)
In PDB		Escherichia coli 536Inner membrane preprotein translocase
30B550S ribosomal protein L1polymer23424765.71UniProt (P0A7L0)
Pfam (PF00687)
In PDB		Escherichia coli K-12
31B650S ribosomal protein L2polymer27229792.41UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli K-12
32BD50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli K-12
33BE50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli K-12
34BF50S ribosomal protein L5polymer17820202.41UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli K-12
35BG50S ribosomal protein L6polymer17618801.61UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli K-12
36BH50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli K-12
37BI50S ribosomal protein L11polymer14114763.21UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coli K-12
38BJ50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli K-12
39BK50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli K-12
40BL50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli K-12
41BM50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli K-12
42BN50S ribosomal protein L17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli K-12
43BO50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli K-12
44BP50S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli K-12
45BQ50S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli K-12
46BR50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli K-12
47BS50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli K-12
48BT50S ribosomal protein L23polymer10011222.21UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli K-12
49BU50S ribosomal protein L24polymer10311208.11UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli K-12
50BV50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli K-12
51BW50S ribosomal protein L27polymer849015.31UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli K-12
52BX50S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli K-12
53BY50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli K-12
54BZ50S ribosomal protein L30polymer586423.61UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli K-12
55B050S ribosomal protein L32polymer566332.21UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli K-12
56B150S ribosomal protein L33polymer546257.41UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli K-12
57B250S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli K-12
58B350S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli K-12Ribosomal protein A
59B450S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli K-12Ribosomal protein B
60A0, A1, B8, BA, BB...(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATEnon-polymer720.0101Chemie (PEV)
61BA, BB, B8, A0, A1...(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEnon-polymer749.032Chemie (PGV)
Sequence modifications
AZ: 22 - 103 (UniProt: Q8X9Y5)
PDBExternal DatabaseDetails
Gln 104-expression tag
His 105-expression tag
Ala 106-expression tag
Arg 107-expression tag
Leu 108-expression tag
Asp 109-expression tag
Lys 110-expression tag
Pro 111-expression tag
Gly 112-expression tag
Ala 113-expression tag
Arg 114-expression tag
His 115-expression tag
Pro 116-expression tag
Cys 117-expression tag
Trp 118-expression tag
Pro 119-expression tag
AO: 1 - 88 (UniProt: P0A7S3)
PDBExternal DatabaseDetails
Arg 79Gln 80conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains60
Total formula weight2314239.9
Non-Polymers*Number of molecules133
Total formula weight96689.4
All*Total formula weight2410929.3
*Water molecules are not included.

218853

数据于2024-04-24公开中

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