4G0R
Structural characterization of H-1 Parvovirus: comparison of infectious virions to replication defective particles
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Capsid protein VP1 | polymer | 735 | 81341.2 | 1 | UniProt (P03136) Pfam (PF08398) Pfam (PF00740) In PDB | H-1 parvovirus | Coat protein VP1 |
| 2 | C | DNA (5'-D(P*CP*TP*GP*AP*CP*TP*TP*CP*AP*A)-3') | polymer | 10 | 3004.0 | 1 | H-1 PARVOVIRUS | ||
| 3 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
| 4 | A | 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE | non-polymer | 307.2 | 1 | Chemie (DC) | |||
| 5 | A | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
| 6 | A | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 7 | C | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 8 | water | water | 18.0 | 131 | Chemie (HOH) |
Sequence modifications
A: -141 - 593 (UniProt: P03136)
| PDB | External Database | Details |
|---|---|---|
| Asp 104 | - | SEE REMARK 999 |
| Gly 295 | Ala 436 | SEE REMARK 999 |
| Met 296 | Cys 437 | SEE REMARK 999 |
| Pro 297 | Leu 438 | SEE REMARK 999 |
| Pro 298 | Gln 439 | SEE REMARK 999 |
| Arg 299 | Gly 440 | SEE REMARK 999 |
| Arg 506 | His 647 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 84345.2 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 685.5 | |
| All* | Total formula weight | 85030.7 |
