1N32

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin

エンティティ

Entity ID	鎖名	説明	種類	鎖長	化学式量	分子数	データベース名(アクセス番号)	由来する生物種	エンティティの一般名
1	A	16S RIBOSOMAL RNA	polymer	1522	493958.3	1	GenBank (155076)	Thermus thermophilus
2	Y	ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA	polymer	17	5460.3	1		Thermus thermophilus
3	Z	A-SITE MESSENGER RNA FRAGMENT	polymer	6	1792.0	1		Thermus thermophilus
4	B	30S RIBOSOMAL PROTEIN S2	polymer	256	29317.7	1	GenBank (13446664) Pfam (PF00318) UniProt (by SIFTS) (P80371) In PDB	Thermus thermophilus
5	C	30S RIBOSOMAL PROTEIN S3	polymer	239	26751.1	1	GenBank (13446666) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) In PDB	Thermus thermophilus
6	D	30S RIBOSOMAL PROTEIN S4	polymer	208	24242.3	1	UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB	Thermus thermophilus
7	E	30S RIBOSOMAL PROTEIN S5	polymer	161	17452.2	1	UniProt (P27152) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5) In PDB	Thermus thermophilus
8	F	30S RIBOSOMAL PROTEIN S6	polymer	101	11988.8	1	UniProt (P23370) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) In PDB	Thermus thermophilus
9	G	30S RIBOSOMAL PROTEIN S7	polymer	155	17919.8	1	UniProt (P17291) Pfam (PF00177) In PDB	Thermus thermophilus
10	H	30S RIBOSOMAL PROTEIN S8	polymer	138	15868.6	1	UniProt (P24319) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB	Thermus thermophilus
11	I	30S RIBOSOMAL PROTEIN S9	polymer	128	14429.7	1	GenBank (13446668) Pfam (PF00380) UniProt (by SIFTS) (P80374) In PDB	Thermus thermophilus
12	J	30S RIBOSOMAL PROTEIN S10	polymer	104	11823.8	1	UniProt (P80375) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7) In PDB	Thermus thermophilus
13	K	30S RIBOSOMAL PROTEIN S11	polymer	129	13737.9	1	GenBank (4519421) Pfam (PF00411) UniProt (by SIFTS) (P80376) In PDB	Thermus thermophilus
14	L	30S RIBOSOMAL PROTEIN S12	polymer	135	14920.8	1	UniProt (P17293) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) In PDB	Thermus thermophilus
15	M	30S RIBOSOMAL PROTEIN S13	polymer	126	14338.9	1	GenBank (4519420) Pfam (PF00416) UniProt (by SIFTS) (P80377) In PDB	Thermus thermophilus
16	N	30S RIBOSOMAL PROTEIN S14	polymer	60	7027.5	1	UniProt (P24320) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB	Thermus thermophilus
17	O	30S RIBOSOMAL PROTEIN S15	polymer	88	10447.2	1	UniProt (P80378) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76) In PDB	Thermus thermophilus
18	P	30S RIBOSOMAL PROTEIN S16	polymer	88	10410.0	1	UniProt (P80379) Pfam (PF00886) UniProt (by SIFTS) (Q5SJH3) In PDB	Thermus thermophilus
19	Q	30S RIBOSOMAL PROTEIN S17	polymer	104	12193.5	1	UniProt (P24321) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) In PDB	Thermus thermophilus
20	R	30S RIBOSOMAL PROTEIN S18	polymer	88	10244.3	1	EMBL (6739549) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) In PDB	Thermus thermophilus
21	S	30S RIBOSOMAL PROTEIN S19	polymer	92	10474.3	1	UniProt (P80381) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) In PDB	Thermus thermophilus
22	T	30S RIBOSOMAL PROTEIN S20	polymer	106	11736.1	1	EMBL (11125386) Pfam (PF01649) UniProt (by SIFTS) (P80380) In PDB	Thermus thermophilus
23	V	30S RIBOSOMAL PROTEIN THX	polymer	26	3218.8	1	UniProt (P32193) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) In PDB	Thermus thermophilus
24	A	PAROMOMYCIN	non-polymer		615.6	1	Chemie (PAR)
25	A, M, Y, D, E...	MAGNESIUM ION	non-polymer		24.3	158	Chemie (MG)
26	N, D	ZINC ION	non-polymer		65.4	2	Chemie (ZN)

配列変更

H: 1 - 138 (UniProt: P24319)

PDB	外部データベース	詳細
Asp 25	Glu 25	conflict
Arg 37	Lys 37	conflict
Asp 52	Glu 52	conflict
Val 61	Ile 61	conflict
Tyr 62	His 62	conflict
His 81	Lys 81	conflict
Lys 88	Arg 88	conflict
Ser 115	Pro 115	conflict

Q: 2 - 105 (UniProt: P24321)

PDB	外部データベース	詳細
Lys 50	Arg 49	conflict
Leu 53	Val 52	conflict
Ser 62	Ala 61	conflict
Ser 79	Glu 78	conflict
Met 82	Leu 81	conflict
Ile 90	Val 89	conflict
Gln 96	Ala 95	conflict

非対称単位の内容

タンパク質・ 核酸鎖	鎖の数	23
	化学式量合計	789753.6
タンパク質・ 核酸・ 糖鎖以外*	分子数	161
	化学式量合計	4586.6
全て*	化学式量合計	794340.2

*水分子は含んでいません