5Y6F
  • Download 5y6f
  • View 5y6f
Molmil generated image of 5y6f
CRYSTAL STRUCTURE OF YCGR IN COMPLEX WITH C-DI-GMP FROM ESCHERICHIA COLI
Descriptor:Flagellar brake protein YcgR, SULFATE ION, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
Authors:Hou, Y.J., Wang, D.C., Li, D.F.
Deposit date:2017-08-11
Release date:2018-07-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:C-di-GMP plays a dual role in the YcgR-mediated motility regulation
To Be Published
5Y6G
  • Download 5y6g
  • View 5y6g
Molmil generated image of 5y6g
PILZ DOMAIN WITH C-DI-GMP OF YCGR FROM ESCHERICHIA COLI
Descriptor:Flagellar brake protein YcgR, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), SULFATE ION
Authors:Hou, Y.J., Wang, D.C., Li, D.F.
Deposit date:2017-08-11
Release date:2018-07-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:C-di-GMP plays a dual role in the YcgR-mediated motility regulation
To Be Published
5Y4R
  • Download 5y4r
  • View 5y4r
Molmil generated image of 5y4r
STRUCTURE OF A METHYLTRANSFERASE COMPLEX
Descriptor:Chemotaxis protein methyltransferase 1, Cyclic diguanosine monophosphate-binding protein PA4608, SULFATE ION, ...
Authors:Yan, X., Xin, L., Tan, Y.J., Jin, S., Liang, Z.X., Gao, Y.G.
Deposit date:2017-08-04
Release date:2017-11-29
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:Structural analyses unravel the molecular mechanism of cyclic di-GMP regulation of bacterial chemotaxis via a PilZ adaptor protein.
J. Biol. Chem., 293, 2018
5VX6
  • Download 5vx6
  • View 5vx6
Molmil generated image of 5vx6
STRUCTURE OF BACILLUS SUBTILIS INHIBITOR OF MOTILITY (MOTI/DGRA)
Descriptor:Uncharacterized protein YpfA, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
Authors:Subramanian, S., Dann III, C.
Deposit date:2017-05-23
Release date:2017-11-22
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (3.197 Å)
Cite:Structure of Bacillus subtilis Inhibitor of motility (MotI/DgrA)
To Be Published
5XLY
  • Download 5xly
  • View 5xly
Molmil generated image of 5xly
CRYSTAL STRUCTURE OF CHER1 IN COMPLEX WITH C-DI-GMP-BOUND MAPZ
Descriptor:Chemotaxis protein methyltransferase 1, Cyclic diguanosine monophosphate-binding protein PA4608, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
Authors:Yuan, Z., Zhu, Y., Gu, L.
Deposit date:2017-05-12
Release date:2017-08-23
Last modified:2017-08-30
Method:X-RAY DIFFRACTION (1.763 Å)
Cite:Structural basis for the regulation of chemotaxis by MapZ in the presence of c-di-GMP
Acta Crystallogr D Struct Biol, 73, 2017
5EJZ
  • Download 5ejz
  • View 5ejz
Molmil generated image of 5ejz
BACTERIAL CELLULOSE SYNTHASE PRODUCT-BOUND STATE
Descriptor:Putative cellulose synthase, poly(unk), BETA-D-GLUCOSE, ...
Authors:Morgan, J.L.W., Zimmer, J.
Deposit date:2015-11-02
Release date:2016-03-09
Last modified:2016-03-30
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Observing cellulose biosynthesis and membrane translocation in crystallo.
Nature, 531, 2016
5EIY
  • Download 5eiy
  • View 5eiy
Molmil generated image of 5eiy
BACTERIAL CELLULOSE SYNTHASE BOUND TO A SUBSTRATE ANALOGUE
Descriptor:Putative cellulose synthase, poly(unk), DIUNDECYL PHOSPHATIDYL CHOLINE, ...
Authors:McNamara, J.T., Zimmer, J.
Deposit date:2015-10-30
Release date:2016-03-09
Last modified:2016-03-30
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Observing cellulose biosynthesis and membrane translocation in crystallo.
Nature, 531, 2016
5EJ1
  • Download 5ej1
  • View 5ej1
Molmil generated image of 5ej1
PRE-TRANSLOCATION STATE OF BACTERIAL CELLULOSE SYNTHASE
Descriptor:Putative cellulose synthase, poly(unk), BETA-D-GLUCOSE, ...
Authors:Moragn, J.L.W., Zimmer, J.
Deposit date:2015-10-30
Release date:2016-03-30
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Observing cellulose biosynthesis and membrane translocation in crystallo.
Nature, 531, 2016
4RT0
  • Download 4rt0
  • View 4rt0
Molmil generated image of 4rt0
STRUCTURE OF THE ALG44 PILZ DOMAIN FROM PSEUDOMONAS AERUGINOSA PAO1 IN COMPLEX WITH C-DI-GMP
Descriptor:Alginate biosynthesis protein Alg44, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), 1,2-ETHANEDIOL
Authors:Whitfield, G.B., Whitney, J.C.
Deposit date:2014-11-12
Release date:2015-04-08
Last modified:2015-06-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dimeric c-di-GMP Is Required for Post-translational Regulation of Alginate Production in Pseudomonas aeruginosa.
J.Biol.Chem., 290, 2015
4RT1
  • Download 4rt1
  • View 4rt1
Molmil generated image of 4rt1
STRUCTURE OF THE ALG44 PILZ DOMAIN (R95A MUTANT) FROM PSEUDOMONAS AERUGINOSA PAO1 IN COMPLEX WITH C-DI-GMP
Descriptor:Alginate biosynthesis protein Alg44, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CHLORIDE ION, ...
Authors:Whitfield, G.B., Whitney, J.C.
Deposit date:2014-11-12
Release date:2015-04-08
Last modified:2015-06-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dimeric c-di-GMP Is Required for Post-translational Regulation of Alginate Production in Pseudomonas aeruginosa.
J.Biol.Chem., 290, 2015
4Q63
  • Download 4q63
  • View 4q63
Molmil generated image of 4q63
CRYSTAL STRUCTURE OF LEGIONELLA UNCHARACTERIZED PROTEIN LPG0364
Descriptor:Uncharacterized protein Lpg0364, CADMIUM ION, FORMIC ACID, ...
Authors:Kim, Y., Evdokimova, E., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-04-21
Release date:2014-05-07
Method:X-RAY DIFFRACTION (1.953 Å)
Cite:Crystal Structure of Legionella Uncharacterized Protein Lpg0364
To be Published
4P02
  • Download 4p02
  • View 4p02
Molmil generated image of 4p02
STRUCTURE OF BACTERIAL CELLULOSE SYNTHASE WITH CYCLIC-DI-GMP BOUND.
Descriptor:Cellulose Synthase subunit A, Cellulose Synthase subunit B, unidentified peptide, ...
Authors:Morgan, J.L.W., McNamara, J.T., Zimmer, J.
Deposit date:2014-02-20
Release date:2014-04-09
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Mechanism of activation of bacterial cellulose synthase by cyclic di-GMP.
Nat.Struct.Mol.Biol., 21, 2014
4P00
  • Download 4p00
  • View 4p00
Molmil generated image of 4p00
BACTERIAL CELLULOSE SYNTHASE IN COMPLEX WITH CYCLIC-DI-GMP AND UDP
Descriptor:Cellulose Synthase A subunit, Cellulose Synthase B subunit, unidentified peptide, ...
Authors:Morgan, J.L.W., McNamara, J.T., Zimmer, J.
Deposit date:2014-02-19
Release date:2014-04-09
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Mechanism of activation of bacterial cellulose synthase by cyclic di-GMP.
Nat.Struct.Mol.Biol., 21, 2014
4I86
  • Download 4i86
  • View 4i86
Molmil generated image of 4i86
CRYSTAL STRUCTURE OF PILZ DOMAIN OF CESA FROM CELLULOSE SYNTHESIZING BACTERIUM
Descriptor:Cellulose synthase 1
Authors:Fujiwara, T., Komoda, K., Sakurai, N., Tanaka, I., Yao, M.
Deposit date:2012-12-03
Release date:2013-04-03
Method:X-RAY DIFFRACTION (2.098 Å)
Cite:The c-di-GMP recognition mechanism of the PilZ domain of bacterial cellulose synthase subunit A
Biochem.Biophys.Res.Commun., 431, 2013
4HG6
  • Download 4hg6
  • View 4hg6
Molmil generated image of 4hg6
STRUCTURE OF A CELLULOSE SYNTHASE - CELLULOSE TRANSLOCATION INTERMEDIATE
Descriptor:Cellulose Synthase Subunit A, Cellulose Synthase Subunit B, BETA-D-GLUCOSE, ...
Authors:Zimmer, J.
Deposit date:2012-10-07
Release date:2012-12-19
Last modified:2013-01-16
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Crystallographic snapshot of cellulose synthesis and membrane translocation.
Nature, 493, 2012
4FOU
  • Download 4fou
  • View 4fou
Molmil generated image of 4fou
STRUCTURE OF THE PILZ-FIMX(EAL DOMAIN)-C-DI-GMP COMPLEX RESPONSIBLE FOR THE REGULATION OF BACTERIAL TYPE IV PILUS BIOGENESIS
Descriptor:FimX, Type IV fimbriae assembly protein, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), ...
Authors:Farah, C.S., Guzzo, C.R.
Deposit date:2012-06-21
Release date:2013-03-27
Last modified:2013-06-12
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the PilZ-FimXEAL-c-di-GMP Complex Responsible for the Regulation of Bacterial Type IV Pilus Biogenesis.
J.Mol.Biol., 425, 2013
4F48
  • Download 4f48
  • View 4f48
Molmil generated image of 4f48
THE X-RAY STRUCTURAL OF FIMXEAL-C-DI-GMP-PILZ COMPLEXES FROM XANTHOMONAS CAMPESTRIS
Descriptor:Putative uncharacterized protein, Type IV fimbriae assembly protein, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
Authors:Chin, K.-H., Liao, Y.-T., Chou, S.-H.
Deposit date:2012-05-10
Release date:2012-11-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural polymorphism of c-di-GMP bound to an EAL domain and in complex with a type II PilZ-domain protein
Acta Crystallogr.,Sect.D, 68, 2012
2L74
  • Download 2l74
  • View 2l74
Molmil generated image of 2l74
SOLUTION STRUCTURE OF THE PILZ DOMAIN PROTEIN PA4608 COMPLEX WITH C-DI-GMP IDENTIFIES CHARGE CLUSTERING AS MOLECULAR READOUT
Descriptor:Putative uncharacterized protein PA4608, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
Authors:Habazettl, J., Allan, M., Jenal, U., Grzesiek, S.
Deposit date:2010-12-02
Release date:2011-02-09
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Solution structure of the PilZ domain protein PA4608 complex with cyclic di-GMP identifies charge clustering as molecular readout
J.Biol.Chem., 286, 2011
3KYF
  • Download 3kyf
  • View 3kyf
Molmil generated image of 3kyf
CRYSTAL STRUCTURE OF P4397 COMPLEXED WITH C-DI-GMP
Descriptor:Putative uncharacterized protein, GUANOSINE-5'-MONOPHOSPHATE
Authors:Ryu, K.S., Ko, J., Kim, H., Choi, B.S.
Deposit date:2009-12-06
Release date:2010-04-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of PP4397 Reveals the Molecular Basis for Different c-di-GMP Binding Modes by Pilz Domain Proteins.
J.Mol.Biol., 398, 2010
3KYG
  • Download 3kyg
  • View 3kyg
Molmil generated image of 3kyg
CRYSTAL STRUCTURE OF VCA0042 (L135R) COMPLEXED WITH C-DI-GMP
Descriptor:Putative uncharacterized protein VCA0042, GUANOSINE-5'-MONOPHOSPHATE
Authors:Ryu, K.S., Ko, J., Kim, H., Choi, B.S.
Deposit date:2009-12-06
Release date:2010-04-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of PP4397 Reveals the Molecular Basis for Different c-di-GMP Binding Modes by Pilz Domain Proteins.
J.Mol.Biol., 398, 2010
3DSG
  • Download 3dsg
  • View 3dsg
Molmil generated image of 3dsg
XC1028 FROM XANTHOMONAS CAMPESTRIS ADOPTS A PILZ DOMAIN-LIKE STRUCTURE YET WITH TRIVIAL C-DI-GMP BINDING ACTIVITY
Descriptor:Type IV fimbriae assembly protein
Authors:Li, T.N., Chin, K.H., Liu, J.H., Wang, A.H.J., Chou, S.H.
Deposit date:2008-07-12
Release date:2009-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:XC1028 from Xanthomonas campestris adopts a PilZ domain-like structure without a c-di-GMP switch.
Proteins, 75, 2009
3CNR
  • Download 3cnr
  • View 3cnr
Molmil generated image of 3cnr
CRYSTAL STRUCTURE OF PILZ (XAC1133) FROM XANTHOMONAS AXONOPODIS PV CITRI
Descriptor:Type IV fimbriae assembly protein
Authors:Guzzo, C.R., Farah, C.S.
Deposit date:2008-03-26
Release date:2009-03-31
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:PILZ protein structure and interactions with PILB and the FIMX EAL domain: implications for control of type IV pilus biogenesis.
J.Mol.Biol., 393, 2009
2RDE
  • Download 2rde
  • View 2rde
Molmil generated image of 2rde
CRYSTAL STRUCTURE OF VCA0042 COMPLEXED WITH C-DI-GMP
Descriptor:Uncharacterized protein VCA0042, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
Authors:Benach, J., Swaminathan, S.S., Tamayo, R., Seetharaman, J., Handelman, S., Forouhar, F., Neely, H., Camilli, A., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-09-22
Release date:2007-10-30
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:The structural basis of cyclic diguanylate signal transduction by PilZ domains.
Embo J., 26, 2007
2GJG
  • Download 2gjg
  • View 2gjg
Molmil generated image of 2gjg
CRYSTAL STRUCTURE OF A PILZ-CONTAINING PROTEIN (PP4397) FROM PSEUDOMONAS PUTIDA KT2440 AT 2.25 A RESOLUTION
Descriptor:hypothetical protein PP4397, 1,2-ETHANEDIOL
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-03-30
Release date:2006-04-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of hypothetical protein (NP_746511.1) from Pseudomonas putida KT2440 at 2.25 A resolution
To be published
1YWU
  • Download 1ywu
  • View 1ywu
Molmil generated image of 1ywu
SOLUTION NMR STRUCTURE OF PSEUDOMONAS AERUGINOSA PROTEIN PA4608. NORTHEAST STRUCTURAL GENOMICS TARGET PAT7
Descriptor:hypothetical protein PA4608
Authors:Ramelot, T.A., Yee, A.A., Cort, J.R., Semesi, A., Arrowsmith, C.H., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-02-18
Release date:2005-03-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure and binding studies confirm that PA4608 from Pseudomonas aeruginosa is a PilZ domain and a c-di-GMP binding protein.
Proteins, 66, 2007
<12>
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2018 Protein Data Bank Japan