PDB: 16 resultsInfo pagesStatus searchChemie searchBIRD

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6GRH	E. coli Microcin synthetase McbBCD complex with truncated pro-MccB17 bound Descriptor: 1,2-ETHANEDIOL, Bacteriocin microcin B17, CHLORIDE ION, ... Authors: Ghilarov, D, Stevenson, C.E.M, Travin, D.Y, Piskunova, J, Serebryakova, M, Maxwell, A, Lawson, D.M, Severinov, K. Deposit date: 2018-06-11 Release date: 2019-01-30 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison. Mol. Cell, 73, 2019
6PEU	Structure of YcaO enzyme from Methanocaldococcus jannaschii in complex with peptide Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLY-ARG-LEU-GLY-PHE-TYR-GLY-TYR-ASP-LEU-GLN-ASP, MAGNESIUM ION, ... Authors: Dong, S.-H, Nair, S.K. Deposit date: 2019-06-20 Release date: 2019-11-06 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Mechanistic Basis for Ribosomal Peptide Backbone Modifications. Acs Cent.Sci., 5, 2019
6CIB	The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+ Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, OXAMIC ACID, ... Authors: Dong, S.-H, Nair, S.K. Deposit date: 2018-02-23 Release date: 2018-03-21 Last modified: 2018-03-28 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Enzymatic reconstitution of ribosomal peptide backbone thioamidation. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6GOS	E. coli Microcin synthetase McbBCD complex with pro-MccB17 bound Descriptor: 1,2-ETHANEDIOL, Bacteriocin microcin B17, CHLORIDE ION, ... Authors: Ghilarov, D, Stevenson, C.E.M, Travin, D.Y, Piskunova, J, Serebryakova, M, Maxwell, A, Lawson, D.M, Severinov, K. Deposit date: 2018-06-04 Release date: 2019-01-30 Last modified: 2019-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison. Mol. Cell, 73, 2019
4V1T	Heterocyclase in complex with substrate and Cofactor Descriptor: ADENOSINE-5'-DIPHOSPHATE, LYND, MAGNESIUM ION, ... Authors: Koehnke, J, Naismith, J.H. Deposit date: 2014-10-02 Release date: 2015-01-14 Last modified: 2018-06-20 Method: X-RAY DIFFRACTION (2.14 Å) Cite: Structural Analysis of Leader Peptide Binding Enables Leader-Free Cyanobactin Processing Nat.Chem.Biol., 11, 2015
4Q86	YcaO with AMP Bound Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, Ribosomal protein S12 methylthiotransferase accessory factor YcaO Authors: Chekan, J.R, Nair, S.K. Deposit date: 2014-04-25 Release date: 2014-08-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Discovery of a new ATP-binding motif involved in peptidic azoline biosynthesis. Nat.Chem.Biol., 10, 2014
6PE3	Structure of YcaO enzyme from Methanocaldococcus jannaschii in complex with ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Uncharacterized protein MJ1094 Authors: Dong, S.-H, Nair, S.K. Deposit date: 2019-06-19 Release date: 2020-01-08 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Mechanistic Basis for Ribosomal Peptide Backbone Modifications. Acs Cent.Sci., 5, 2019
6CI7	The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+ Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, YcaO Authors: Dong, S.-H, Nair, S.K. Deposit date: 2018-02-23 Release date: 2018-03-21 Last modified: 2018-03-28 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Enzymatic reconstitution of ribosomal peptide backbone thioamidation. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6GRG	E. coli Microcin synthetase McbBCD complex with pro-MccB17, ADP and phosphate bound Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Ghilarov, D, Stevenson, C.E.M, Travin, D.Y, Piskunova, J, Serebryakova, M, Maxwell, A, Lawson, D.M, Severinov, K. Deposit date: 2018-06-11 Release date: 2019-01-30 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison. Mol. Cell, 73, 2019
4Q84	Apo YcaO Descriptor: MERCURY (II) ION, Ribosomal protein S12 methylthiotransferase accessory factor YcaO Authors: Chekan, J.R, Nair, S.K. Deposit date: 2014-04-25 Release date: 2014-08-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Discovery of a new ATP-binding motif involved in peptidic azoline biosynthesis. Nat.Chem.Biol., 10, 2014
6GRI	E. coli Microcin synthetase McbBCD complex Descriptor: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, Microcin B17-processing protein McbB, ... Authors: Ghilarov, D, Stevenson, C.E.M, Travin, D.Y, Piskunova, J, Serebryakova, M, Maxwell, A, Lawson, D.M, Severinov, K. Deposit date: 2018-06-11 Release date: 2019-01-30 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison. Mol. Cell, 73, 2019
4V1U	Heterocyclase in complex with substrate and Cofactor Descriptor: ADENOSINE MONOPHOSPHATE, CALCIUM ION, LYND, ... Authors: Koehnke, J, Naismith, J.H. Deposit date: 2014-10-02 Release date: 2015-01-14 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.86 Å) Cite: Structural Analysis of Leader Peptide Binding Enables Leader-Free Cyanobactin Processing. Nat.Chem.Biol., 11, 2015
4BS9	Structure of the heterocyclase TruD Descriptor: TRUD, ZINC ION Authors: Koehnke, J, Bent, A.F, Zollman, D, Smith, K, Houssen, W.E, Zhu, X, Mann, G, Lebl, T, Scharff, R, Shirran, S, Botting, C.H, Jaspars, M, Schwarz-Linek, U, Naismith, J.H. Deposit date: 2013-06-09 Release date: 2013-11-06 Last modified: 2014-01-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: The Cyanobactin Heterocyclase Enzyme: A Processive Adenylase that Operates with a Defined Order of Reaction. Angew.Chem.Int.Ed.Engl., 52, 2013
4V1V	Heterocyclase in complex with substrate and Cofactor Descriptor: LYND, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Koehnke, J, Naismith, J.H. Deposit date: 2014-10-02 Release date: 2015-01-14 Last modified: 2015-08-05 Method: X-RAY DIFFRACTION (3.01 Å) Cite: Structural Analysis of Leader Peptide Binding Enables Leader-Free Cyanobactin Processing. Nat.Chem.Biol., 11, 2015
7U58	YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis Descriptor: MAGNESIUM ION, MusD, ZINC ION Authors: Zheng, Y, Nair, S.K. Deposit date: 2022-03-01 Release date: 2022-11-02 Last modified: 2023-01-11 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis. Nat.Chem.Biol., 19, 2023
4Q85	YcaO with Non-hydrolyzable ATP (AMPCPP) Bound Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, Ribosomal protein S12 methylthiotransferase accessory factor YcaO Authors: Chekan, J.R, Nair, S.K. Deposit date: 2014-04-25 Release date: 2014-08-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.29 Å) Cite: Discovery of a new ATP-binding motif involved in peptidic azoline biosynthesis. Nat.Chem.Biol., 10, 2014