PDB: 77 resultsInfo pagesStatus searchChemie searchBIRD

---

6R33	Aspergillus niger ferulic acid decarboxylase (Fdc)in complex with the covalent adduct formed between prFMN cofactor and phenylpropiolic acid, following decarboxylation (Int3') Descriptor: Ferulic acid decarboxylase 1, MANGANESE (II) ION, POTASSIUM ION, ... Authors: Bailey, S.S, Leys, D. Deposit date: 2019-03-19 Release date: 2019-08-28 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.01 Å) Cite: Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition To be published
4ZA9	Structure of A. niger fdc1 in complex with a phenylpyruvate derived adduct to the prenylated flavin cofactor Descriptor: 1-deoxy-5-O-phosphono-1-[(1S)-3,3,4,5-tetramethyl-9,11-dioxo-1-(phenylacetyl)-2,3,8,9,10,11-hexahydro-1H,7H-quinolino[1,8-fg]pteridin-7-yl]-D-ribitol, MANGANESE (II) ION, POTASSIUM ION, ... Authors: Payne, K.A.P, Leys, D. Deposit date: 2015-04-13 Release date: 2015-06-17 Last modified: 2015-07-01 Method: X-RAY DIFFRACTION (1.01 Å) Cite: New cofactor supports alpha , beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition. Nature, 522, 2015
6R3N	Aspergillus niger ferulic acid decarboxylase (Fdc) in complex with the covalent adduct formed between prFMN cofactor and butynoic acid (Int1') Descriptor: Ferulic acid decarboxylase 1, MANGANESE (II) ION, POTASSIUM ION, ... Authors: Bailey, S.S, Leys, D. Deposit date: 2019-03-20 Release date: 2019-08-28 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.02 Å) Cite: Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition To be published
6TIH	Structure of A. niger Fdc WT in complex with benzothiophene 2 carboxylic acid Descriptor: Ferulic acid decarboxylase 1, MANGANESE (II) ION, POTASSIUM ION, ... Authors: Leys, D. Deposit date: 2019-11-22 Release date: 2020-06-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.021 Å) Cite: Enzymatic C-H activation of aromatic compounds through CO 2 fixation. Nat.Chem.Biol., 16, 2020
6EV8	Structure of E277Q A. niger Fdc1 with prFMN in the hydroxylated form Descriptor: Ferulic acid decarboxylase 1, MANGANESE (II) ION, POTASSIUM ION, ... Authors: Bailey, S.S, David, L, Payne, K.A.P. Deposit date: 2017-11-01 Release date: 2017-12-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.03 Å) Cite: The role of conserved residues in Fdc decarboxylase in prenylated flavin mononucleotide oxidative maturation, cofactor isomerization, and catalysis. J. Biol. Chem., 293, 2018
6EV7	Structure of E282D A. niger Fdc1 with prFMN in the iminium form Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Bailey, S.S, Leys, D, Payne, K.A.P. Deposit date: 2017-11-01 Release date: 2017-12-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.06 Å) Cite: The role of conserved residues in Fdc decarboxylase in prenylated flavin mononucleotide oxidative maturation, cofactor isomerization, and catalysis. J. Biol. Chem., 293, 2018
4ZA8	Crystal structure of A niger Fdc1 in complex with penta-fluorocinnamic acid Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol, 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol, MANGANESE (II) ION, ... Authors: Payne, K.A.P, Leys, D. Deposit date: 2015-04-13 Release date: 2015-06-17 Last modified: 2019-01-30 Method: X-RAY DIFFRACTION (1.06 Å) Cite: New cofactor supports alpha , beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition. Nature, 522, 2015
6TIE	Structure of A. niger Fdc I327S variant in complex with indol-2-carboxylic acid Descriptor: 1H-indole-2-carboxylic acid, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Leys, D. Deposit date: 2019-11-22 Release date: 2020-06-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.06 Å) Cite: Enzymatic C-H activation of aromatic compounds through CO 2 fixation. Nat.Chem.Biol., 16, 2020
6TIB	Structure of A. niger Fdc I327S variant in complex with 2 naphthoic acid Descriptor: DI(HYDROXYETHYL)ETHER, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Leys, D. Deposit date: 2019-11-22 Release date: 2020-06-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.07 Å) Cite: Enzymatic C-H activation of aromatic compounds through CO 2 fixation. Nat.Chem.Biol., 16, 2020
6R2Z	Aspergillus niger ferulic acid decarboxylase (Fdc) F437L variant in complex with the covalent adduct formed between prFMN cofactor and phenylpropiolic acid (Int1') Descriptor: Ferulic acid decarboxylase 1, MANGANESE (II) ION, POTASSIUM ION, ... Authors: Bailey, S.S, Leys, D. Deposit date: 2019-03-19 Release date: 2019-08-28 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.08 Å) Cite: Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition To be published
6R34	Aspergillus niger ferulic acid decarboxylase (Fdc) in complex with the covalent adduct formed between prFMN cofactor and phenyl acetylene (Int3') Descriptor: Ferulic acid decarboxylase 1, MANGANESE (II) ION, POTASSIUM ION, ... Authors: Bailey, S.S, Leys, D. Deposit date: 2019-03-19 Release date: 2019-08-28 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition To be published
6EV6	Structure of E282Q A. niger Fdc1 with prFMN in the hydroxylated and ketimine forms Descriptor: 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Bailey, S.S, David, L, Payne, K.A.P. Deposit date: 2017-11-01 Release date: 2017-12-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.1 Å) Cite: The role of conserved residues in Fdc decarboxylase in prenylated flavin mononucleotide oxidative maturation, cofactor isomerization, and catalysis. J. Biol. Chem., 293, 2018
4ZA5	Structure of A. niger Fdc1 with the prenylated-flavin cofactor in the iminium and ketimine forms. Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol, 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol, Fdc1, ... Authors: Payne, K.A.P, Leys, D. Deposit date: 2015-04-13 Release date: 2015-06-17 Last modified: 2015-07-01 Method: X-RAY DIFFRACTION (1.1 Å) Cite: New cofactor supports alpha , beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition. Nature, 522, 2015
4ZA7	Structure of A. niger Fdc1 in complex with alpha-methyl cinnamic acid Descriptor: (2E)-2-methyl-3-phenylprop-2-enoic acid, 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol, ... Authors: Payne, K.A.P, Leys, D. Deposit date: 2015-04-13 Release date: 2015-06-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.1 Å) Cite: New cofactor supports alpha , beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition. Nature, 522, 2015
7NF3	Structure of A. niger Fdc T395M variant (AnFdcI) in complex with prFMN Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Saaret, A, Leys, D. Deposit date: 2021-02-05 Release date: 2021-08-04 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Directed evolution of prenylated FMN-dependent Fdc supports efficient in vivo isobutene production. Nat Commun, 12, 2021
6R30	Aspergillus niger ferulic acid decarboxylase (Fdc) L439G variant in complex with the covalent adduct formed between prFMN cofactor and phenylpropiolic acid (Int1') Descriptor: Ferulic acid decarboxylase 1, MANGANESE (II) ION, POTASSIUM ION, ... Authors: Bailey, S.S, Leys, D. Deposit date: 2019-03-19 Release date: 2019-08-28 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.12 Å) Cite: Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition To be published
6TIJ	Structure of A. niger Fdc WT in complex with indol-2-carboxylic acid Descriptor: 1H-indole-2-carboxylic acid, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Leys, D. Deposit date: 2019-11-22 Release date: 2020-06-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.12 Å) Cite: Enzymatic C-H activation of aromatic compounds through CO 2 fixation. Nat.Chem.Biol., 16, 2020
6R2R	Aspergillus niger ferulic acid decarboxylase (Fdc) in complex with prFMN (purified in dark) and alphafluorocinnamic acid Descriptor: (2Z)-2-fluoro-3-phenylprop-2-enoic acid, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Bailey, S.S, Leys, D. Deposit date: 2019-03-18 Release date: 2019-08-28 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.13 Å) Cite: Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition To be published
6R3O	Aspergillus niger ferric acid decarboxylase (Fdc) L439G variant in complex with prFMN (purified in the radical form) and phenylpropiolic acid Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Bailey, S.S, Leys, D. Deposit date: 2019-03-20 Release date: 2019-08-28 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.13 Å) Cite: Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition to be published
6R3G	Aspergillus niger ferulic acid decarboxylase (Fdc) E282Q variant in complex with the covalent adduct formed between prFMN cofactor and alphafluoro-cinnamic acid (Int2) Descriptor: Ferulic acid decarboxylase 1, MANGANESE (II) ION, POTASSIUM ION, ... Authors: Bailey, S.S, Leys, D. Deposit date: 2019-03-20 Release date: 2019-08-28 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.13 Å) Cite: Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition To be published
6EVB	Structure of E282Q A. niger Fdc1 with prFMN in the iminium form Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Bailey, S.S, Leys, D, Payne, K.A.P. Deposit date: 2017-11-01 Release date: 2017-12-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.13 Å) Cite: The role of conserved residues in Fdc decarboxylase in prenylated flavin mononucleotide oxidative maturation, cofactor isomerization, and catalysis. J. Biol. Chem., 293, 2018
6R3I	Aspergillus niger ferulic acid decarboxylase (Fdc) E282Q variant in complex with the covalent adduct formed between prFMN cofactor and pentafluorocinnamic acid (Int2) Descriptor: Ferulic acid decarboxylase 1, MANGANESE (II) ION, POTASSIUM ION, ... Authors: Bailey, S.S, Leys, D. Deposit date: 2019-03-20 Release date: 2019-08-28 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.14 Å) Cite: Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition To be published
6EV4	Structure of wild type A. niger Fdc1 purified in the dark with prFMN in the iminium form Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Bailey, S.S, David, L, Payne, K.A.P. Deposit date: 2017-11-01 Release date: 2017-12-27 Last modified: 2018-02-28 Method: X-RAY DIFFRACTION (1.14 Å) Cite: The role of conserved residues in Fdc decarboxylase in prenylated flavin mononucleotide oxidative maturation, cofactor isomerization, and catalysis. J. Biol. Chem., 293, 2018
4ZAB	Structure of A. niger Fdc1 in complex with alpha-fluoro cinnamic acid Descriptor: (2Z)-2-fluoro-3-phenylprop-2-enoic acid, 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol, ... Authors: Payne, K.A.P, Leys, D. Deposit date: 2015-04-13 Release date: 2015-06-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.16 Å) Cite: New cofactor supports alpha , beta-unsaturated acid decarboxylation via 1,3-dipolar cycloaddition. Nature, 522, 2015
6EVC	Structure of E282Q A. niger Fdc1 in complex with pentafluoro-cinnamic acid Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ... Authors: Bailey, S.S, David, L, Payne, K.A.P. Deposit date: 2017-11-01 Release date: 2017-12-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.18 Å) Cite: The role of conserved residues in Fdc decarboxylase in prenylated flavin mononucleotide oxidative maturation, cofactor isomerization, and catalysis. J. Biol. Chem., 293, 2018

 

1234>