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8G3K
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BU of 8g3k by Molmil
Cryo-EM imaging scaffold subunits A and B used to display KRAS G12C complex with GDP
Descriptor: Cob_adeno_trans domain-containing protein, Cryo-EM imaging scaffold subunit B with DARPin - RCG-33
Authors:Castells-Graells, R, Sawaya, M.R, Yeates, T.O.
Deposit date:2023-02-08
Release date:2023-08-09
Last modified:2023-09-27
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Cryo-EM structure determination of small therapeutic protein targets at 3 angstrom -resolution using a rigid imaging scaffold.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DMH
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BU of 8dmh by Molmil
Lymphocytic choriomeningitis virus glycoprotein in complex with neutralizing antibody M28
Descriptor: 18.5C-M28 Fab Heavy Chain, 18.5C-M28 Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Moon-Walker, A, Hastie, K.M, Zyla, D.S, Saphire, E.O.
Deposit date:2022-07-08
Release date:2023-04-12
Last modified:2023-05-03
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Structural basis for antibody-mediated neutralization of lymphocytic choriomeningitis virus.
Cell Chem Biol, 30, 2023
8DMI
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BU of 8dmi by Molmil
Lymphocytic choriomeningitis virus glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein G1, ...
Authors:Moon-Walker, A, Hastie, K.M, Zyla, D.S, Saphire, E.O.
Deposit date:2022-07-08
Release date:2023-04-12
Last modified:2023-05-03
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural basis for antibody-mediated neutralization of lymphocytic choriomeningitis virus.
Cell Chem Biol, 30, 2023
8D32
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BU of 8d32 by Molmil
Mycobacterium tuberculosis pduO-type ATP:cobalamin adenosyltransferase bound to 5-deoxyadenosylrhodibalamin and PPPi
Descriptor: 5'-DEOXYADENOSINE, Corrinoid adenosyltransferase, MAGNESIUM ION, ...
Authors:Mascarenhas, R.N, Ruetz, M, Koutmos, M, Banerjee, R.
Deposit date:2022-05-31
Release date:2023-05-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A noble substitution leads to the cofactor mimicry by rhodibalamin
To Be Published
7RUU
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BU of 7ruu by Molmil
Structure of Human ATP:Cobalamin Adenosyltransferase R190C bound to adenosylcobalamin
Descriptor: 5'-DEOXYADENOSINE, ACETATE ION, COBALAMIN, ...
Authors:Mascarenhas, R, Gouda, H, Koutmos, M, Banerjee, R.
Deposit date:2021-08-18
Release date:2021-11-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Patient mutations in human ATP:cob(I)alamin adenosyltransferase differentially affect its catalytic versus chaperone functions.
J.Biol.Chem., 297, 2021
7RUT
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BU of 7rut by Molmil
Structure of Human ATP:Cobalamin Adenosyltransferase R190C bound to ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Corrinoid adenosyltransferase, GLYCEROL, ...
Authors:Mascarenhas, R, Gouda, H, Koutmos, M, Banerjee, R.
Deposit date:2021-08-18
Release date:2021-11-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Patient mutations in human ATP:cob(I)alamin adenosyltransferase differentially affect its catalytic versus chaperone functions.
J.Biol.Chem., 297, 2021
7RUV
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BU of 7ruv by Molmil
Structure of Human ATP:Cobalamin Adenosyltransferase E193K bound to adenosylcobalamin
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, Corrinoid adenosyltransferase, ...
Authors:Mascarenhas, R, Gouda, H, Koutmos, M, Banerjee, R.
Deposit date:2021-08-18
Release date:2021-11-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Patient mutations in human ATP:cob(I)alamin adenosyltransferase differentially affect its catalytic versus chaperone functions.
J.Biol.Chem., 297, 2021
6X1I
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BU of 6x1i by Molmil
Two-Component D3 Assembly Constructed by Fusing Symmetric Oligomers to Coiled Coils
Descriptor: Cob_adeno_trans domain-containing protein PH0671 fused to a coiled coil, SnoaL-like Protein fused to a coiled coil
Authors:Laniado, J, Yeates, T.O, Sawaya, M.R.
Deposit date:2020-05-18
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (4.32 Å)
Cite:Geometric Lessons and Design Strategies for Nanoscale Protein Cages.
Acs Nano, 15, 2021
6WH5
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BU of 6wh5 by Molmil
Mycobacterium tuberculosis pduO-type ATP:cobalamin adenosyltransferase bound to cob(II)alamin and PPPi
Descriptor: COBALAMIN, Corrinoid adenosyltransferase, MAGNESIUM ION, ...
Authors:Mascarenhas, R.N, Ruetz, M, Koutmos, M, Banerjee, R.
Deposit date:2020-04-07
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.866 Å)
Cite:Mobile loop dynamics in adenosyltransferase control binding and reactivity of coenzyme B 12 .
Proc.Natl.Acad.Sci.USA, 117, 2020
6WGV
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BU of 6wgv by Molmil
Mycobacterium tuberculosis pduO-type ATP:cobalamin adenosyltransferase bound to adenosylcobalamin and PPPi
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, Corrinoid adenosyltransferase, ...
Authors:Mascarenhas, R.N, Ruetz, M, Koutmos, M, Banerjee, R.
Deposit date:2020-04-06
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.151 Å)
Cite:Mobile loop dynamics in adenosyltransferase control binding and reactivity of coenzyme B 12 .
Proc.Natl.Acad.Sci.USA, 117, 2020
6WGS
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BU of 6wgs by Molmil
Mycobacterium tuberculosis pduO-type ATP:cobalamin adenosyltransferase bound to adenosylcobalamin
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, Corrinoid adenosyltransferase
Authors:Mascarenhas, R.N, Ruetz, M, Koutmos, M, Banerjee, R.
Deposit date:2020-04-06
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mobile loop dynamics in adenosyltransferase control binding and reactivity of coenzyme B 12 .
Proc.Natl.Acad.Sci.USA, 117, 2020
6WGU
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BU of 6wgu by Molmil
Mycobacterium tuberculosis pduO-type ATP:cobalamin adenosyltransferase
Descriptor: Corrinoid adenosyltransferase, SULFATE ION
Authors:Mascarenhas, R.N, Ruetz, M, Koutmos, M, Banerjee, R.
Deposit date:2020-04-06
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Mobile loop dynamics in adenosyltransferase control binding and reactivity of coenzyme B 12 .
Proc.Natl.Acad.Sci.USA, 117, 2020
6D5X
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BU of 6d5x by Molmil
Structure of Human ATP:Cobalamin Adenosyltransferase bound to ATP, Adenosylcobalamin, and Triphosphate
Descriptor: 5'-DEOXYADENOSINE, ADENOSINE-5'-TRIPHOSPHATE, COBALAMIN, ...
Authors:Dodge, G.J, Campanello, G, Smith, J.L, Banerjee, R.
Deposit date:2018-04-19
Release date:2018-10-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Sacrificial Cobalt-Carbon Bond Homolysis in Coenzyme B12as a Cofactor Conservation Strategy.
J. Am. Chem. Soc., 140, 2018
6D5K
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BU of 6d5k by Molmil
Structure of Human ATP:Cobalamin Adenosyltransferase bound to ATP, and Adenosylcobalamin
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-DEOXYADENOSINE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Dodge, G.J, Campanello, G, Smith, J.L, Banerjee, R.
Deposit date:2018-04-19
Release date:2018-10-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Sacrificial Cobalt-Carbon Bond Homolysis in Coenzyme B12as a Cofactor Conservation Strategy.
J. Am. Chem. Soc., 140, 2018
6C9I
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BU of 6c9i by Molmil
Single-Particle reconstruction of DARP14 - A designed protein scaffold displaying ~17kDa DARPin proteins - Scaffold
Descriptor: DARP14 - Subunit A with DARPin, DARP14 - Subunit B
Authors:Gonen, S, Liu, Y, Yeates, T.O, Gonen, T.
Deposit date:2018-01-26
Release date:2018-03-21
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5IM6
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BU of 5im6 by Molmil
Crystal structure of designed two-component self-assembling icosahedral cage I32-28
Descriptor: Designed self-assembling icosahedral cage I32-28 dimeric subunit, Designed self-assembling icosahedral cage I32-28 trimeric subunit
Authors:Liu, Y.A, Cascio, D, Sawaya, M.R, Bale, J.B, Collazo, M.J, Thomas, C, Sheffler, W, King, N.P, Baker, D, Yeates, T.O.
Deposit date:2016-03-05
Release date:2016-07-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (5.588 Å)
Cite:Accurate design of megadalton-scale two-component icosahedral protein complexes.
Science, 353, 2016
4NWQ
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BU of 4nwq by Molmil
Computationally Designed Two-Component Self-Assembling Tetrahedral Cage, T33-21, Crystallized in Space Group F4132
Descriptor: Putative uncharacterized protein PH0671, SULFATE ION, Uncharacterized protein
Authors:McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
4NWP
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BU of 4nwp by Molmil
Computationally Designed Two-Component Self-Assembling Tetrahedral Cage, T33-21, Crystallized in Space Group R32
Descriptor: AMMONIUM ION, Putative uncharacterized protein, SULFATE ION, ...
Authors:McNamara, D.E, King, N.P, Bale, J.B, Sheffler, W, Baker, D, Yeates, T.O.
Deposit date:2013-12-06
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Accurate design of co-assembling multi-component protein nanomaterials.
Nature, 510, 2014
3KE4
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BU of 3ke4 by Molmil
Crystal structure of a PduO-Type ATP:Cob(I)alamin adenosyltransferase from Bacillus cereus
Descriptor: 1,4-DIETHYLENE DIOXIDE, Hypothetical Cytosolic Protein
Authors:Park, A.K, Moon, J.H, Chi, Y.M.
Deposit date:2009-10-23
Release date:2010-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a PduO-Type ATP:Cob(I)alamin adenosyltransferase from Bacillus cereus
To be Published
3KE5
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BU of 3ke5 by Molmil
Crystal structure of a PduO-Type ATP:Cob(I)alamin adenosyltransferase from Bacillus cereus in a complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Hypothetical Cytosolic Protein, MAGNESIUM ION
Authors:Park, A.K, Moon, J.H, Chi, Y.M.
Deposit date:2009-10-23
Release date:2010-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a PduO-Type ATP:Cob(I)alamin adenosyltransferase from Bacillus cereus in a complex with ATP
To be Published
3GAH
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BU of 3gah by Molmil
Structure of a F112H variant PduO-type ATP:corrinoid adenosyltransferase from Lactobacillus reuteri complexed with cobalamin and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, COBALAMIN, Cobalamin adenosyltransferase PduO-like protein, ...
Authors:St Maurice, M, Mera, P.E, Escalante-Semerena, J.C, Rayment, I.
Deposit date:2009-02-17
Release date:2009-07-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Residue Phe112 of the human-type corrinoid adenosyltransferase (PduO) enzyme of Lactobacillus reuteri is critical to the formation of the four-coordinate Co(II) corrinoid substrate and to the activity of the enzyme.
Biochemistry, 48, 2009
3GAJ
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BU of 3gaj by Molmil
Structure of a C-terminal deletion variant of a PduO-type ATP:corrinoid adenosyltransferase from Lactobacillus reuteri complexed with cobalamin and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, COBALAMIN, Cobalamin adenosyltransferase PduO-like protein, ...
Authors:St Maurice, M, Mera, P.E, Escalante-Semerena, J.C, Rayment, I.
Deposit date:2009-02-17
Release date:2009-07-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Residue Phe112 of the human-type corrinoid adenosyltransferase (PduO) enzyme of Lactobacillus reuteri is critical to the formation of the four-coordinate Co(II) corrinoid substrate and to the activity of the enzyme.
Biochemistry, 48, 2009
3GAI
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BU of 3gai by Molmil
Structure of a F112A variant PduO-type ATP:corrinoid adenosyltransferase from Lactobacillus reuteri complexed with cobalamin and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, COBALAMIN, ...
Authors:St Maurice, M, Mera, P.E, Escalante-Semerena, J.C, Rayment, I.
Deposit date:2009-02-17
Release date:2009-07-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Residue Phe112 of the human-type corrinoid adenosyltransferase (PduO) enzyme of Lactobacillus reuteri is critical to the formation of the four-coordinate Co(II) corrinoid substrate and to the activity of the enzyme.
Biochemistry, 48, 2009
3CI3
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BU of 3ci3 by Molmil
Structure of the PduO-type ATP:co(I)rrinoid adenosyltransferase from Lactobacillus reuteri complexed with partial adenosylcobalamin and PPPi
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, Cobalamin adenosyltransferase PduO-like protein, ...
Authors:Maurice, M.St, Mera, P.E, Escalante-Semerena, J.C, Rayment, I.
Deposit date:2008-03-10
Release date:2008-05-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Structural characterization of a human-type corrinoid adenosyltransferase confirms that coenzyme B12 is synthesized through a four-coordinate intermediate.
Biochemistry, 47, 2008
3CI4
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BU of 3ci4 by Molmil
Structure of the PduO-type ATP:co(I)rrinoid adenosyltransferase from Lactobacillus reuteri complexed with four-coordinate cob(II)inamide and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, COB(II)INAMIDE, Cobalamin adenosyltransferase PduO-like protein, ...
Authors:Maurice, M.St, Mera, P.E, Escalante-Semerena, J.C, Rayment, I.
Deposit date:2008-03-10
Release date:2008-05-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural characterization of a human-type corrinoid adenosyltransferase confirms that coenzyme B12 is synthesized through a four-coordinate intermediate.
Biochemistry, 47, 2008

 

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