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8I2E
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BU of 8i2e by Molmil
Crystal structure of Bacillus subtilis LytE in complex with IseA
Descriptor: Probable peptidoglycan endopeptidase LytE, Uncharacterized protein YoeB
Authors:Tandukar, S, Kwon, E, Kim, D.Y.
Deposit date:2023-01-14
Release date:2023-04-05
Last modified:2023-05-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into the regulation of peptidoglycan DL-endopeptidases by inhibitory protein IseA.
Structure, 31, 2023
7R1L
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BU of 7r1l by Molmil
Clostridium thermocellum CtCBM50 structure in complex with beta-1,4-GlcNAc trisaccharide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Spore coat assembly protein SafA
Authors:Ribeiro, D.O, Costa, R, Palma, A.S, Carvalho, A.L.
Deposit date:2022-02-03
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Unravelling Clostridium thermocellum LysM domains: a molecular view on the cooperative recognition of chitin and peptidoglycan
To Be Published
7PVC
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BU of 7pvc by Molmil
The structure of Kbp.K from E. coli with potassium bound.
Descriptor: POTASSIUM ION, Potassium binding protein Kbp
Authors:Smith, B.O.
Deposit date:2021-10-01
Release date:2021-10-13
Last modified:2023-10-11
Method:SOLUTION NMR
Cite:Tuning the Sensitivity of Genetically Encoded Fluorescent Potassium Indicators through Structure-Guided and Genome Mining Strategies.
ACS Sens, 7, 2022
7PUA
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BU of 7pua by Molmil
Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Descriptor: 30S Ribosomal protein S17, putative, 30S ribosomal protein S8, ...
Authors:Lenarcic, T, Leibundgut, M, Saurer, M, Ramrath, D.J.F, Fluegel, T, Boehringer, D, Ban, N.
Deposit date:2021-09-29
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Mitoribosomal small subunit maturation involves formation of initiation-like complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7PUB
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BU of 7pub by Molmil
Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit
Descriptor: 30S Ribosomal protein S17, putative, 30S ribosomal protein S8, ...
Authors:Lenarcic, T, Leibundgut, M, Saurer, M, Ramrath, D.J.F, Fluegel, T, Boehringer, D, Ban, N.
Deposit date:2021-09-29
Release date:2022-05-04
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mitoribosomal small subunit maturation involves formation of initiation-like complexes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7VCM
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BU of 7vcm by Molmil
crystal structure of GINKO1
Descriptor: Green fluorescent protein,Potassium binding protein Kbp,Green fluorescent protein, POTASSIUM ION
Authors:Wen, Y, Campbell, R.E, Lemieux, M.J.
Deposit date:2021-09-03
Release date:2022-07-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A sensitive and specific genetically-encoded potassium ion biosensor for in vivo applications across the tree of life.
Plos Biol., 20, 2022
7BAX
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BU of 7bax by Molmil
Crystal structure of LYS11 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, LysM type receptor kinase
Authors:Laursen, M, Cheng, J, Gysel, K, Blaise, M, Andersen, K.R.
Deposit date:2020-12-16
Release date:2021-11-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Kinetic proofreading of lipochitooligosaccharides determines signal activation of symbiotic plant receptors.
Proc.Natl.Acad.Sci.USA, 118, 2021
7AOR
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BU of 7aor by Molmil
mt-SSU from Trypanosoma cruzi in complex with mt-IF-3.
Descriptor: 30S Ribosomal protein S17-like protein, AKAP7_NLS domain-containing protein, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Soufari, H, Waltz, F, Parrot, C, Bochler, A, Hashem, Y.
Deposit date:2020-10-15
Release date:2021-04-28
Last modified:2021-06-23
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
7ANE
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BU of 7ane by Molmil
Leishmania Major mitochondrial ribosome
Descriptor: 30S Ribosomal protein S17-like protein, 50S ribosomal protein L13-like protein, AKAP7_NLS domain-containing protein, ...
Authors:Soufari, H, Waltz, F, Parrot, C, Bochler, A, Hashem, Y.
Deposit date:2020-10-11
Release date:2021-06-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.
Proc.Natl.Acad.Sci.USA, 117, 2020
6XWE
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BU of 6xwe by Molmil
Crystal structure of LYK3 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETONITRILE, LysM domain receptor-like kinase 3, ...
Authors:Gysel, K, Blaise, M, Andersen, K.R.
Deposit date:2020-01-23
Release date:2020-08-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Ligand-recognizing motifs in plant LysM receptors are major determinants of specificity.
Science, 369, 2020
6VE2
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BU of 6ve2 by Molmil
Tetradecameric PilQ bound by TsaP heptamer from Pseudomonas aeruginosa
Descriptor: Fimbrial assembly protein PilQ, LysM domain-containing protein
Authors:McCallum, M, Tammam, S, Rubinstein, J.L, Burrows, L.L, Howell, P.L.
Deposit date:2019-12-28
Release date:2020-12-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:CryoEM map of Pseudomonas aeruginosa PilQ enables structural characterization of TsaP.
Structure, 29, 2021
6Q40
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BU of 6q40 by Molmil
A secreted LysM effector of the wheat pathogen Zymoseptoria tritici protects the fungal hyphae against chitinase hydrolysis through ligand-dependent polymerisation of LysM homodimers
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, LysM domain-containing protein
Authors:Mesters, J.R, Saleem-Batcha, R, Sanchez-Vallet, A, Thomma, B.P.H.J.
Deposit date:2018-12-05
Release date:2019-10-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.412 Å)
Cite:A secreted LysM effector protects fungal hyphae through chitin-dependent homodimer polymerization.
Plos Pathog., 16, 2020
6HIV
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BU of 6hiv by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome
Descriptor: 12S rRNA, 50S ribosomal protein L13, putative, ...
Authors:Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boerhringer, D, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-10-03
Last modified:2018-11-07
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
6HIZ
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BU of 6hiz by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the head of the small mitoribosomal subunit
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (143-MER), ...
Authors:Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, A, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-09-26
Last modified:2018-11-07
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
6HIW
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BU of 6hiw by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete small mitoribosomal subunit in complex with mt-IF-3
Descriptor: 9S rRNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ramrath, D, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, D, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-09-26
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
5YZK
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BU of 5yzk by Molmil
Solution structure of LysM domain from a chitinase derived from Volvox carteri
Descriptor: Chitinase, lysozyme
Authors:Kitaoku, Y, Nishimura, S, Fukamizo, T, Ohnuma, T.
Deposit date:2017-12-15
Release date:2018-12-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structures and chitin-binding properties of two N-terminal lysin motifs (LysMs) found in a chitinase from Volvox carteri.
Glycobiology, 29, 2019
5YZ6
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BU of 5yz6 by Molmil
Solution structure of LysM domain from a chitinase derived from Volvox carteri
Descriptor: Chitinase, lysozyme
Authors:Kitaoku, Y, Nishimura, S, Fukamizo, T, Ohnuma, T.
Deposit date:2017-12-13
Release date:2018-12-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structures and chitin-binding properties of two N-terminal lysin motifs (LysMs) found in a chitinase from Volvox carteri.
Glycobiology, 29, 2019
5YLG
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BU of 5ylg by Molmil
Crystal Structure of LysM domain from pteris ryukyuensis chitinase A
Descriptor: 1,2-ETHANEDIOL, Chitinase A, ZINC ION
Authors:Ohnuma, T, Kitaoku, Y, Umemoto, N, Numata, T, Fukamizo, T.
Deposit date:2017-10-17
Release date:2018-10-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal Structure of LysM domain from pteris ryukyuensis chitinase A
To Be Published
5K2L
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BU of 5k2l by Molmil
Crystal structure of LysM domain from Volvox carteri chitinase
Descriptor: 1,2-ETHANEDIOL, Chitinase, lysozyme
Authors:Kitaoku, Y, Numata, T, Fukamizo, T, Ohnuma, T.
Deposit date:2016-05-19
Release date:2017-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Chitin oligosaccharide binding to the lysin motif of a novel type of chitinase from the multicellular green alga, Volvox carteri.
Plant Mol. Biol., 93, 2017
5JCE
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BU of 5jce by Molmil
Crystal structure of OsCEBiP complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin elicitor-binding protein
Authors:Chai, J.J, Liu, S.M, Wang, J.Z.
Deposit date:2016-04-15
Release date:2016-06-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Molecular Mechanism for Fungal Cell Wall Recognition by Rice Chitin Receptor OsCEBiP
Structure, 24, 2016
5JCD
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BU of 5jcd by Molmil
Crystal structure of OsCEBiP
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin elicitor-binding protein
Authors:Chai, J.J, Liu, S.M, Wang, J.Z.
Deposit date:2016-04-15
Release date:2017-02-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Mechanism for Fungal Cell Wall Recognition by Rice Chitin Receptor OsCEBiP
Structure, 24, 2016
3JC9
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BU of 3jc9 by Molmil
Architectural model of the type IVa pilus machine in a non-piliated state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PilA, ...
Authors:Chang, Y.-W, Rettberg, L.A, Jensen, G.J.
Deposit date:2015-11-24
Release date:2016-03-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY
Cite:Architecture of the type IVa pilus machine.
Science, 351, 2016
3JC8
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BU of 3jc8 by Molmil
Architectural model of the type IVa pilus machine in a piliated state
Descriptor: LysM domain protein, PilA, PilN, ...
Authors:Chang, Y.-W, Rettberg, L.A, Jensen, G.J.
Deposit date:2015-11-24
Release date:2016-03-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY
Cite:Architecture of the type IVa pilus machine.
Science, 351, 2016
5C8P
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BU of 5c8p by Molmil
Crystal structure of MoCVNH3 variant (Mo0v) in complex with (N-GlcNAc)3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MoCVNH3 variant
Authors:Koharudin, L.M.I, Gronenborn, A.M.
Deposit date:2015-06-25
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insight into Fungal Cell Wall Recognition by a CVNH Protein with a Single LysM Domain.
Structure, 23, 2015
5C8O
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BU of 5c8o by Molmil
Crystal structure of MoCVNH3 variant (Mo0v)
Descriptor: MoCVNH3 variant
Authors:Koharudin, L.M.I, Gronenborn, A.M.
Deposit date:2015-06-25
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural Insight into Fungal Cell Wall Recognition by a CVNH Protein with a Single LysM Domain.
Structure, 23, 2015

 

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