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1E0G
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LYSM Domain from E.coli MLTD
Descriptor: Membrane-bound lytic murein transglycosylase D
Authors:Bateman, A, Bycroft, M.
Deposit date:2000-03-27
Release date:2000-06-21
Last modified:2019-09-25
Method:SOLUTION NMR
Cite:The Structure of a Lysm Domain from E.Coli Membrane Bound Lytic Murein Transglycosylase D (Mltd)
J.Mol.Biol., 299, 2000
1Y7M
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BU of 1y7m by Molmil
Crystal Structure of the B. subtilis YkuD protein at 2 A resolution
Descriptor: CADMIUM ION, SULFATE ION, hypothetical protein BSU14040
Authors:Bielnicki, J.A, Devedjiev, Y, Derewenda, U, Dauter, Z, Joachimiak, A, Derewenda, Z.S, Midwest Center for Structural Genomics (MCSG)
Deposit date:2004-12-09
Release date:2005-03-01
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:B. subtilis ykuD protein at 2.0 A resolution: insights into the structure and function of a novel, ubiquitous family of bacterial enzymes.
Proteins, 62, 2006
2DJP
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BU of 2djp by Molmil
The solution structure of the LysM domain of human hypothetical protein SB145
Descriptor: Hypothetical protein SB145
Authors:Sasagawa, A, Tochio, N, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-05
Release date:2006-10-05
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The solution structure of the LysM domain of human hypothetical protein SB145
To be Published
2L9Y
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BU of 2l9y by Molmil
Solution structure of the MoCVNH-LysM module from the rice blast fungus Magnaporthe oryzae protein (MGG_03307)
Descriptor: CVNH-LysM lectin
Authors:Koharudin, L.M.I, Viscomi, A.R, Montanini, B, Kershaw, M.J, Talbot, N.J, Ottonello, S, Gronenborn, A.M.
Deposit date:2011-02-26
Release date:2011-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure-Function Analysis of a CVNH-LysM Lectin Expressed during Plant Infection by the Rice Blast Fungus Magnaporthe oryzae.
Structure, 19, 2011
2MKX
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BU of 2mkx by Molmil
Solution structure of LysM the peptidoglycan binding domain of autolysin AtlA from Enterococcus faecalis
Descriptor: Autolysin
Authors:Baxter, N.J, Williamson, M.P.
Deposit date:2014-02-14
Release date:2014-06-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Molecular basis for bacterial peptidoglycan recognition by LysM domains.
Nat Commun, 5, 2014
2MPW
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BU of 2mpw by Molmil
Solution structure of the LysM region of the E. coli Intimin periplasmic domain
Descriptor: Intimin
Authors:Coles, M, Chaubey, M, Leo, J.C, Linke, D, Schuetz, M.C, Goetz, F, Autenrieth, I.B.
Deposit date:2014-06-05
Release date:2014-11-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The Intimin periplasmic domain mediates dimerisation and binding to peptidoglycan.
Mol.Microbiol., 95, 2015
2MTZ
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Haddock model of Bacillus subtilis L,D-transpeptidase in complex with a peptidoglycan hexamuropeptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid, Putative L,D-transpeptidase YkuD, intact bacterial peptidoglycan
Authors:Schanda, P, Triboulet, S, Laguri, C, Bougault, C, Ayala, I, Callon, M, Arthur, M, Simorre, J.
Deposit date:2014-09-02
Release date:2015-01-14
Last modified:2023-11-15
Method:SOLID-STATE NMR
Cite:Atomic model of a cell-wall cross-linking enzyme in complex with an intact bacterial peptidoglycan.
J.Am.Chem.Soc., 136, 2014
3JC8
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Architectural model of the type IVa pilus machine in a piliated state
Descriptor: LysM domain protein, PilA, PilN, ...
Authors:Chang, Y.-W, Rettberg, L.A, Jensen, G.J.
Deposit date:2015-11-24
Release date:2016-03-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY
Cite:Architecture of the type IVa pilus machine.
Science, 351, 2016
3JC9
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Architectural model of the type IVa pilus machine in a non-piliated state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PilA, ...
Authors:Chang, Y.-W, Rettberg, L.A, Jensen, G.J.
Deposit date:2015-11-24
Release date:2016-03-16
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY
Cite:Architecture of the type IVa pilus machine.
Science, 351, 2016
3ZQD
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BU of 3zqd by Molmil
B. subtilis L,D-transpeptidase
Descriptor: L, D-TRANSPEPTIDASE YKUD
Authors:Lecoq, L, Simorre, J.-P, Bougault, C, Arthur, M, Hugonnet, J.-E, Veckerle, C, Pessey, O.
Deposit date:2011-06-09
Release date:2012-05-23
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Dynamics Induced by Beta-Lactam Antibiotics in the Active Site of Bacillus subtilis L,D-Transpeptidase.
Structure, 20, 2012
4A1I
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ykud from B.subtilis
Descriptor: CADMIUM ION, CHLORIDE ION, PUTATIVE L, ...
Authors:Blaise, M, Fuglsang Midtgaard, S, Roi Midtgaard, S, Boesen, T, Thirup, S.
Deposit date:2011-09-15
Release date:2012-09-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structures of Three New Crystal Forms of the Ykud L,D-Transpeptidase from B. Subtilis.
To be Published
4A1J
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Ykud L,D-transpeptidase from B.subtilis
Descriptor: PUTATIVE L, D-TRANSPEPTIDASE YKUD, SULFATE ION
Authors:Blaise, M, Fuglsang Midtgaard, S, Roi Midtgaard, S, Boesen, T, Thirup, S.
Deposit date:2011-09-15
Release date:2012-09-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Ykud
To be Published
4A1K
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Ykud L,D-transpeptidase
Descriptor: PUTATIVE L, D-TRANSPEPTIDASE YKUD, SULFATE ION
Authors:Blaise, M, Fuglsang Midtgaard, S, Roi Midtgaard, S, Boesen, T, Thirup, S.
Deposit date:2011-09-15
Release date:2012-09-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structures of Three New Crystal Forms of the Ykud L,D-Transpeptidase from B. Subtilis.
To be Published
4A52
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NMR structure of the imipenem-acylated L,D-transpeptidase from Bacillus subtilis
Descriptor: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carboxylic acid, PUTATIVE L, D-TRANSPEPTIDASE YKUD
Authors:Lecoq, L, Simorre, J, Bougault, C, Arthur, M, Hugonnet, J, Veckerle, C, Pessey, O.
Deposit date:2011-10-24
Release date:2012-05-30
Last modified:2018-01-24
Method:SOLUTION NMR
Cite:Dynamics Induced by Beta-Lactam Antibiotics in the Active Site of Bacillus subtilis L,D-Transpeptidase.
Structure, 20, 2012
4B8V
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Cladosporium fulvum LysM effector Ecp6 in complex with a beta-1,4- linked N-acetyl-D-glucosamine tetramer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, ...
Authors:Saleem-Batcha, R, Sanchez-Vallet, A, Hansen, G, Thomma, B.P.H.J, Mesters, J.R.
Deposit date:2012-08-30
Release date:2013-07-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Fungal Effector Ecp6 Outcompetes Host Immune Receptor for Chitin Binding Through Intrachain Lysm Dimerization
Elife, 2, 2013
4B9H
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Cladosporium fulvum LysM effector Ecp6 in complex with a beta-1,4- linked N-acetyl-D-glucosamine tetramer: I3C heavy atom derivative
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, ...
Authors:Saleem-Batcha, R, Sanchez-Vallet, A, Hansen, G, Thomma, B.P.H.J, Mesters, J.R.
Deposit date:2012-09-04
Release date:2013-07-17
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Fungal Effector Ecp6 Outcompetes Host Immune Receptor for Chitin Binding Through Intrachain Lysm Dimerization
Elife, 2, 2013
4EBY
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BU of 4eby by Molmil
Crystal structure of the ectodomain of a receptor like kinase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin elicitor receptor kinase 1, ...
Authors:Chai, J, Liu, T, Han, Z, She, J, Wang, J.
Deposit date:2012-03-25
Release date:2012-06-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Chitin-induced dimerization activates a plant immune receptor.
Science, 336, 2012
4EBZ
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Crystal structure of the ectodomain of a receptor like kinase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin elicitor receptor kinase 1, ...
Authors:Chai, J, Liu, T, Han, Z, She, J, Wang, J.
Deposit date:2012-03-26
Release date:2012-06-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.792 Å)
Cite:Chitin-induced dimerization activates a plant immune receptor.
Science, 336, 2012
4PXV
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BU of 4pxv by Molmil
Crystal Structure of LysM domain from pteris ryukyuensis chitinase A
Descriptor: Chitinase A, ZINC ION
Authors:Ohnuma, T, Umemoto, N, Numata, T, Fukamizo, T.
Deposit date:2014-03-25
Release date:2015-03-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of LysM domain from pteris ryukyuensis chitinase A
To be Published
4S3K
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BU of 4s3k by Molmil
Crystal structure of the Bacillus megaterium QM B1551 spore cortex-lytic enzyme SleL
Descriptor: SULFATE ION, Spore germination protein YaaH
Authors:Christie, G, Chirgadze, D.Y, Ustok, F.I.
Deposit date:2015-02-04
Release date:2015-08-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and functional analysis of SleL, a peptidoglycan lysin involved in germination of Bacillus spores.
Proteins, 83, 2015
4UZ2
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BU of 4uz2 by Molmil
Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus
Descriptor: CELL WALL-BINDING ENDOPEPTIDASE-RELATED PROTEIN
Authors:Wong, J.E.M.M, Blaise, M.
Deposit date:2014-09-04
Release date:2015-01-14
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:An Intermolecular Binding Mechanism Involving Multiple Lysm Domains Mediates Carbohydrate Recognition by an Endopeptidase.
Acta Crystallogr.,Sect.D, 71, 2015
4UZ3
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Crystal structure of the N-terminal LysM domains from the putative NlpC/P60 D,L endopeptidase from T. thermophilus bound to N-acetyl-chitohexaose
Descriptor: 1,4-DIETHYLENE DIOXIDE, 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, ...
Authors:Wong, J.E.M.M, Blaise, M.
Deposit date:2014-09-04
Release date:2015-01-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:An Intermolecular Binding Mechanism Involving Multiple Lysm Domains Mediates Carbohydrate Recognition by an Endopeptidase.
Acta Crystallogr.,Sect.D, 71, 2015
4XCM
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Crystal structure of the putative NlpC/P60 D,L endopeptidase from T. thermophilus
Descriptor: Cell wall-binding endopeptidase-related protein
Authors:Wong, J, Midtgaard, S, Gysel, K, Thygesen, M.B, Sorensen, K.K, Jensen, K.J, Stougaard, J, Thirup, S, Blaise, M.
Deposit date:2014-12-18
Release date:2015-01-14
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:An intermolecular binding mechanism involving multiple LysM domains mediates carbohydrate recognition by an endopeptidase.
Acta Crystallogr.,Sect.D, 71, 2015
5BUM
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BU of 5bum by Molmil
Crystal Structure of LysM domain from Equisetum arvense chitinase A
Descriptor: Chitinase A, SULFATE ION
Authors:Kitaoku, Y, Numata, T, Ohnuma, T, Taira, T, Fukamizo, T.
Deposit date:2015-06-04
Release date:2016-06-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure, mechanism, and phylogeny of LysM-chitinase conjugates specifically found in fern plants.
Plant Sci., 321, 2022
5C8O
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Crystal structure of MoCVNH3 variant (Mo0v)
Descriptor: MoCVNH3 variant
Authors:Koharudin, L.M.I, Gronenborn, A.M.
Deposit date:2015-06-25
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural Insight into Fungal Cell Wall Recognition by a CVNH Protein with a Single LysM Domain.
Structure, 23, 2015

 

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