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6HG7
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BU of 6hg7 by Molmil
Crystal structure of a collagen II fragment containing the binding site of PEDF and COMP, (POG)4-LKG HRG FTG LQG-POG(4)
Descriptor: Collagen alpha-1(II) chain, SULFATE ION
Authors:Gebauer, J.M, Koehler, A, Dietmar, H, Gompert, M, Neundorf, I, Zaucke, F, Koch, M, Baumann, U.
Deposit date:2018-08-22
Release date:2018-12-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1 Å)
Cite:COMP and TSP-4 interact specifically with the novel GXKGHR motif only found in fibrillar collagens.
Sci Rep, 8, 2018
3AH9
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BU of 3ah9 by Molmil
Crystal structure of (Pro-Pro-Gly)9 at 1.1 A resolution
Descriptor: ACETIC ACID, AZIDE ION, collagen-like peptide
Authors:Okuyama, K, Morimoto, T, Hongo, C, Hosaka, N, Nishino, N.
Deposit date:2010-04-22
Release date:2011-04-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Crystal structure of (Pro-Pro-Gly)9
To be Published
3AI6
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BU of 3ai6 by Molmil
Triple-helical structure of (D-Pro-D-Pro-Gly)9 at 1.1 A resolution
Descriptor: collagen-like peptide
Authors:Okuyama, K, Miyama, K, Kawaguchi, T, Nishino, N.
Deposit date:2010-05-10
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Triple-helical structure of (D-Pro-D-Pro-Gly)9
To be Published
1X1K
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BU of 1x1k by Molmil
Host-guest peptide (Pro-Pro-Gly)4-(Pro-alloHyp-Gly)-(Pro-Pro-Gly)4
Descriptor: Host-guest peptide (Pro-Pro-Gly)4-(Pro-alloHyp-Gly)-(Pro-Pro-Gly)4
Authors:Jiravanichanun, N, Hongo, C, Wu, G, Noguchi, K, Okuyama, K, Nishino, N, Silva, T.
Deposit date:2005-04-05
Release date:2005-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Unexpected puckering of hydroxyproline in the guest triplets, hyp-pro-gly and pro-allohyp-gly sandwiched between pro-pro-gly sequence
Chembiochem, 6, 2005
2D3H
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BU of 2d3h by Molmil
Crystal structures of collagen model peptides (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4
Descriptor: COLLAGEN MODEL PEPTIDES (PRO-PRO-GLY)4-HYP-HYP-GLY-(PRO-PRO-GLY)4
Authors:Wu, G, Noguchi, K, Okuyama, K, Mizuno, K, Bachinger, H.P.
Deposit date:2005-09-28
Release date:2006-09-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:High-resolution structures of collagen-like peptides [(Pro-Pro-Gly)(4)-Xaa-Yaa-Gly-(Pro-Pro-Gly)(4)]: Implications for triple-helix hydration and Hyp(X) puckering.
Biopolymers, 91, 2009
2D3F
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BU of 2d3f by Molmil
Crystal structures of collagen model peptides (Pro-Pro-Gly)4-Pro-Hyp-Gly-(Pro-Pro-Gly)4
Descriptor: COLLAGEN MODEL PEPTIDES (PRO-PRO-GLY)4-PRO-HYP-GLY-(PRO-PRO-GLY)4
Authors:Wu, G, Noguchi, K, Okuyama, K, Ebisuzaki, S, Nishino, N.
Deposit date:2005-09-27
Release date:2006-09-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:High-resolution structures of collagen-like peptides [(Pro-Pro-Gly)(4)-Xaa-Yaa-Gly-(Pro-Pro-Gly)(4)]: Implications for triple-helix hydration and Hyp(X) puckering.
Biopolymers, 91, 2009
7WWS
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BU of 7wws by Molmil
Structure of a triple-helix region of human collagen type III from Trautec
Descriptor: Collagen alpha-1(III) chain
Authors:Qian, S, Li, H, Fan, X, Tian, X, Li, J, Wang, L, Chu, Y.
Deposit date:2022-02-14
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of a triple-helix region of human collagen type III from Trautec
To Be Published
7WWR
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BU of 7wwr by Molmil
Structure of a triple-helix region of human collagen type III from Trautec
Descriptor: Collagen alpha-1(III) chain
Authors:Qian, S, Li, H, Fan, X, Tian, X, Li, J, Wang, L, Chu, Y.
Deposit date:2022-02-14
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of a triple-helix region of human collagen type III from Trautec
To Be Published
1K6F
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BU of 1k6f by Molmil
Crystal Structure of the Collagen Triple Helix Model [(Pro-Pro-Gly)10]3
Descriptor: collagen triple helix
Authors:Berisio, R, Vitagliano, L, Mazzarella, L, Zagari, A.
Deposit date:2001-10-16
Release date:2002-01-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of the collagen triple helix model [(Pro-Pro-Gly)(10)](3)
Protein Sci., 11, 2002
2CUO
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BU of 2cuo by Molmil
Collagen model peptide (PRO-PRO-GLY)9
Descriptor: COLLAGEN MODEL PEPTIDE (PRO-PRO-GLY)9
Authors:Hongo, C, Noguchi, K, Okuyama, K, Tanaka, Y, Nishino, N.
Deposit date:2005-05-27
Release date:2005-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Repetitive interactions observed in the crystal structure of a collagen-model peptide, [(Pro-Pro-Gly)9]3
J.Biochem.(Tokyo), 138, 2005
3B2C
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BU of 3b2c by Molmil
Crystal structure of the collagen triple helix model [{PRO-HYP(R)-GLY}4-{HYP(S)-Pro-GLY}2-{PRO-HYP(R)-GLY}4]3
Descriptor: Collagen-like peptide
Authors:Motooka, D, Kawahara, K, Nakamura, S, Doi, M, Nishi, Y, Nishiuchi, Y, Nakazawa, T, Yoshida, T, Ohkubo, T, Kobayashi, Y, Kang, Y.K, Uchiyama, S.
Deposit date:2011-07-26
Release date:2012-04-04
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-pro-gly units
Biopolymers, 98, 2011
1WCK
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BU of 1wck by Molmil
Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.
Descriptor: BCLA PROTEIN, CACODYLATE ION
Authors:Rety, S, Salamitou, S, Augusto, L.A, Chaby, R, Lehegarat, F, Lewit-Bentley, A.
Deposit date:2004-11-17
Release date:2005-10-25
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:The Crystal Structure of the Bacillus Anthracis Spore Surface Protein Bcla Shows Remarkable Similarity to Mammalian Proteins.
J.Biol.Chem., 280, 2005
1PWB
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BU of 1pwb by Molmil
High resolution crystal structure of an active recombinant fragment of human lung surfactant protein D with maltose
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose, ...
Authors:Shrive, A.K, Tharia, H.A, Strong, P, Kishore, U, Burns, I, Rizkallah, P.J, Reid, K.B, Greenhough, T.J.
Deposit date:2003-07-01
Release date:2003-08-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:High-resolution structural insights into ligand binding and immune cell recognition by human lung surfactant protein D
J.Mol.Biol., 331, 2003
3B0S
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BU of 3b0s by Molmil
Crystal Structure of (Gly-Pro-Hyp)9
Descriptor: collagen-like peptide
Authors:Okuyama, K, Miyama, K, Mizuno, K, Bachinger, H.P.
Deposit date:2011-06-14
Release date:2012-05-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of (Gly-Pro-Hyp)(9) : Implications for the collagen molecular model.
Biopolymers, 97, 2012
4GYX
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BU of 4gyx by Molmil
The von Willebrand Factor A3 domain binding region of type III collagen stabilized by the cysteine knot
Descriptor: Type III collagen fragment in a host peptide stabilized by the cysteine knot
Authors:Boudko, S.P, Bachinger, H.P.
Deposit date:2012-09-05
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:The NC2 Domain of Type IX Collagen Determines the Chain Register of the Triple Helix.
J.Biol.Chem., 287, 2012
1WZB
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BU of 1wzb by Molmil
Crystal structure of the collagen triple helix model [{HYP(R)-HYP(R)-GLY}10]3
Descriptor: Collagen triple helix
Authors:Kawahara, K, Nakamura, S, Nishi, Y, Uchiyama, S, Nishiuchi, Y, Nakazawa, T, Ohkubo, T, Kobayashi, Y.
Deposit date:2005-03-03
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl-4(R)-hydroxyprolylglycine]10
Biochemistry, 44, 2005
1YM8
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BU of 1ym8 by Molmil
crystal structure of GZZ shows up puckering of the proline ring in the Xaa position.
Descriptor: collagen gly-4(R)hyp-4(R)hyp
Authors:Schumacher, M.A, Mizuno, K, Bachinger, H.P.
Deposit date:2005-01-20
Release date:2005-04-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The crystal structure of the collagen-like polypeptide (glycyl-4(R)-hydroxyprolyl-4(R)-hydroxyprolyl)9 at 1.55 A resolution shows up-puckering of the proline ring in the Xaa position.
J.Biol.Chem., 280, 2005
5CTD
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BU of 5ctd by Molmil
Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a2a1a1 of type I collagen
Descriptor: Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain, Collagen alpha-2(I) chain,Collagen alpha-2(IX) chain
Authors:Boudko, S.P, Bachinger, H.P.
Deposit date:2015-07-23
Release date:2016-08-03
Last modified:2017-07-12
Method:X-RAY DIFFRACTION (1.5991 Å)
Cite:Structural insight for chain selection and stagger control in collagen.
Sci Rep, 6, 2016
3IKN
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BU of 3ikn by Molmil
Crystal structure of galactose bound trimeric human lung surfactant protein D
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, beta-D-galactopyranose
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2009-08-06
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325
J.Mol.Biol., 394, 2009
1PW9
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BU of 1pw9 by Molmil
High resolution crystal structure of an active recombinant fragment of human lung surfactant protein D
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D
Authors:Shrive, A.K, Tharia, H.A, Strong, P, Kishore, U, Burns, I, Rizkallah, P.J, Reid, K.B, Greenhough, T.J.
Deposit date:2003-07-01
Release date:2003-08-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High resolution structural insights into ligand binding and immune cell recognition by human lung surfactant protein D
J.Mol.Biol., 331, 2003
5OXS
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BU of 5oxs by Molmil
Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2017-09-07
Release date:2018-06-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS.
PLoS ONE, 13, 2018
3IKR
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BU of 3ikr by Molmil
Crystal structure of alpha 1-4 mannobiose bound trimeric human lung surfactant protein D
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-mannopyranose
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2009-08-06
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325
J.Mol.Biol., 394, 2009
4E52
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BU of 4e52 by Molmil
Crystal structure of Haemophilus Eagan 4A polysaccharide bound human lung surfactant protein D
Descriptor: 4,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid-(5-1)-L-glycero-alpha-D-manno-heptopyranose, CALCIUM ION, Pulmonary surfactant-associated protein D
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2012-03-13
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of a Complex of Surfactant Protein D (SP-D) and Haemophilus influenzae Lipopolysaccharide Reveals Shielding of Core Structures in SP-D-Resistant Strains.
Infect.Immun., 84, 2016
5OXR
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BU of 5oxr by Molmil
Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R7 oligosaccharide
Descriptor: CALCIUM ION, L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid, Pulmonary surfactant-associated protein D
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2017-09-07
Release date:2018-06-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS.
PLoS ONE, 13, 2018
3IKP
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BU of 3ikp by Molmil
Crystal structure of inositol phosphate bound trimeric human lung surfactant protein D
Descriptor: CALCIUM ION, D-MYO-INOSITOL-1-PHOSPHATE, Pulmonary surfactant-associated protein D
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2009-08-06
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325
J.Mol.Biol., 394, 2009

 

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