Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1K6F
DownloadVisualize
BU of 1k6f by Molmil
Crystal Structure of the Collagen Triple Helix Model [(Pro-Pro-Gly)10]3
Descriptor: collagen triple helix
Authors:Berisio, R, Vitagliano, L, Mazzarella, L, Zagari, A.
Deposit date:2001-10-16
Release date:2002-01-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of the collagen triple helix model [(Pro-Pro-Gly)(10)](3)
Protein Sci., 11, 2002
1PWB
DownloadVisualize
BU of 1pwb by Molmil
High resolution crystal structure of an active recombinant fragment of human lung surfactant protein D with maltose
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose, ...
Authors:Shrive, A.K, Tharia, H.A, Strong, P, Kishore, U, Burns, I, Rizkallah, P.J, Reid, K.B, Greenhough, T.J.
Deposit date:2003-07-01
Release date:2003-08-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:High-resolution structural insights into ligand binding and immune cell recognition by human lung surfactant protein D
J.Mol.Biol., 331, 2003
1PW9
DownloadVisualize
BU of 1pw9 by Molmil
High resolution crystal structure of an active recombinant fragment of human lung surfactant protein D
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D
Authors:Shrive, A.K, Tharia, H.A, Strong, P, Kishore, U, Burns, I, Rizkallah, P.J, Reid, K.B, Greenhough, T.J.
Deposit date:2003-07-01
Release date:2003-08-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High resolution structural insights into ligand binding and immune cell recognition by human lung surfactant protein D
J.Mol.Biol., 331, 2003
1Q7D
DownloadVisualize
BU of 1q7d by Molmil
Structure of the integrin alpha2beta1 binding collagen peptide
Descriptor: collagen alfa 1(I) chain peptide GPOGPOGFOGERGPOGPOGPO
Authors:Emsley, J, Knight, C.G, Farndale, R.W, Barnes, M.J.
Deposit date:2003-08-18
Release date:2004-01-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Integrin alpha2beta1-binding Collagen Peptide.
J.Mol.Biol., 335, 2004
1WCK
DownloadVisualize
BU of 1wck by Molmil
Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.
Descriptor: BCLA PROTEIN, CACODYLATE ION
Authors:Rety, S, Salamitou, S, Augusto, L.A, Chaby, R, Lehegarat, F, Lewit-Bentley, A.
Deposit date:2004-11-17
Release date:2005-10-25
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:The Crystal Structure of the Bacillus Anthracis Spore Surface Protein Bcla Shows Remarkable Similarity to Mammalian Proteins.
J.Biol.Chem., 280, 2005
1YM8
DownloadVisualize
BU of 1ym8 by Molmil
crystal structure of GZZ shows up puckering of the proline ring in the Xaa position.
Descriptor: collagen gly-4(R)hyp-4(R)hyp
Authors:Schumacher, M.A, Mizuno, K, Bachinger, H.P.
Deposit date:2005-01-20
Release date:2005-04-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The crystal structure of the collagen-like polypeptide (glycyl-4(R)-hydroxyprolyl-4(R)-hydroxyprolyl)9 at 1.55 A resolution shows up-puckering of the proline ring in the Xaa position.
J.Biol.Chem., 280, 2005
1WZB
DownloadVisualize
BU of 1wzb by Molmil
Crystal structure of the collagen triple helix model [{HYP(R)-HYP(R)-GLY}10]3
Descriptor: Collagen triple helix
Authors:Kawahara, K, Nakamura, S, Nishi, Y, Uchiyama, S, Nishiuchi, Y, Nakazawa, T, Ohkubo, T, Kobayashi, Y.
Deposit date:2005-03-03
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl-4(R)-hydroxyprolylglycine]10
Biochemistry, 44, 2005
1X1K
DownloadVisualize
BU of 1x1k by Molmil
Host-guest peptide (Pro-Pro-Gly)4-(Pro-alloHyp-Gly)-(Pro-Pro-Gly)4
Descriptor: Host-guest peptide (Pro-Pro-Gly)4-(Pro-alloHyp-Gly)-(Pro-Pro-Gly)4
Authors:Jiravanichanun, N, Hongo, C, Wu, G, Noguchi, K, Okuyama, K, Nishino, N, Silva, T.
Deposit date:2005-04-05
Release date:2005-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Unexpected puckering of hydroxyproline in the guest triplets, hyp-pro-gly and pro-allohyp-gly sandwiched between pro-pro-gly sequence
Chembiochem, 6, 2005
2CUO
DownloadVisualize
BU of 2cuo by Molmil
Collagen model peptide (PRO-PRO-GLY)9
Descriptor: COLLAGEN MODEL PEPTIDE (PRO-PRO-GLY)9
Authors:Hongo, C, Noguchi, K, Okuyama, K, Tanaka, Y, Nishino, N.
Deposit date:2005-05-27
Release date:2005-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Repetitive interactions observed in the crystal structure of a collagen-model peptide, [(Pro-Pro-Gly)9]3
J.Biochem.(Tokyo), 138, 2005
2D3F
DownloadVisualize
BU of 2d3f by Molmil
Crystal structures of collagen model peptides (Pro-Pro-Gly)4-Pro-Hyp-Gly-(Pro-Pro-Gly)4
Descriptor: COLLAGEN MODEL PEPTIDES (PRO-PRO-GLY)4-PRO-HYP-GLY-(PRO-PRO-GLY)4
Authors:Wu, G, Noguchi, K, Okuyama, K, Ebisuzaki, S, Nishino, N.
Deposit date:2005-09-27
Release date:2006-09-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:High-resolution structures of collagen-like peptides [(Pro-Pro-Gly)(4)-Xaa-Yaa-Gly-(Pro-Pro-Gly)(4)]: Implications for triple-helix hydration and Hyp(X) puckering.
Biopolymers, 91, 2009
2D3H
DownloadVisualize
BU of 2d3h by Molmil
Crystal structures of collagen model peptides (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4
Descriptor: COLLAGEN MODEL PEPTIDES (PRO-PRO-GLY)4-HYP-HYP-GLY-(PRO-PRO-GLY)4
Authors:Wu, G, Noguchi, K, Okuyama, K, Mizuno, K, Bachinger, H.P.
Deposit date:2005-09-28
Release date:2006-09-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:High-resolution structures of collagen-like peptides [(Pro-Pro-Gly)(4)-Xaa-Yaa-Gly-(Pro-Pro-Gly)(4)]: Implications for triple-helix hydration and Hyp(X) puckering.
Biopolymers, 91, 2009
2F6A
DownloadVisualize
BU of 2f6a by Molmil
Collagen Adhesin and Collagen Complex Structure
Descriptor: Collagen, Collagen adhesin
Authors:Zong, Y, Narayana, S.L.V.
Deposit date:2005-11-28
Release date:2006-12-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:A 'Collagen Hug' model for Staphylococcus aureus CNA binding to collagen.
Embo J., 24, 2005
3DMW
DownloadVisualize
BU of 3dmw by Molmil
Crystal structure of human type III collagen G982-G1023 containing C-terminal cystine knot
Descriptor: Collagen alpha-1(III) chain
Authors:Boudko, S.P, Engel, J, Okuyama, K, Mizuno, K, Bachinger, H.P, Schumacher, M.A.
Deposit date:2008-07-01
Release date:2008-09-30
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of human type III collagen Gly991-Gly1032 cystine knot-containing peptide shows both 7/2 and 10/3 triple helical symmetries.
J.Biol.Chem., 283, 2008
2V53
DownloadVisualize
BU of 2v53 by Molmil
Crystal structure of a SPARC-collagen complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, COLLAGEN ALPHA-1(III) CHAIN, ...
Authors:Hohenester, E, Sasaki, T, Giudici, C, Farndale, R.W, Bachinger, H.P.
Deposit date:2008-10-01
Release date:2008-11-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Basis of Sequence-Specific Collagen Recognition by Sparc.
Proc.Natl.Acad.Sci.USA, 105, 2008
3GXE
DownloadVisualize
BU of 3gxe by Molmil
Complex of a Low Affinity Collagen Site with the Fibronectin 8-9FnI Domain Pair
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Collagen alpha-1(I) chain, Fibronectin, ...
Authors:Sladek, B, Campbell, I.D, Vakonakis, I.
Deposit date:2009-04-02
Release date:2010-04-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural analysis of collagen type I interactions with human fibronectin reveals a cooperative binding mode
J.Biol.Chem., 288, 2013
3HR2
DownloadVisualize
BU of 3hr2 by Molmil
Low resolution, molecular envelope structure of type I collagen in situ determined by fiber diffraction. Single type I collagen molecule, post rigid body refinement, 'relaxed'
Descriptor: Collagen alpha-1(I) chain, Collagen alpha-2(I) chain
Authors:Orgel, J.P.
Deposit date:2009-06-08
Release date:2009-07-14
Last modified:2024-02-21
Method:FIBER DIFFRACTION (5.16 Å)
Cite:Microfibrillar Structure of Type I Collagen in Situ.
Proc.Natl.Acad.Sci.USA, 103, 2006
3HQV
DownloadVisualize
BU of 3hqv by Molmil
Low resolution, molecular envelope structure of type I collagen in situ determined by fiber diffraction. Single type I collagen molecule, rigid body refinement
Descriptor: Collagen alpha-1(I) chain, Collagen alpha-2(I) chain
Authors:Orgel, J.P.
Deposit date:2009-06-08
Release date:2009-07-14
Last modified:2024-02-21
Method:FIBER DIFFRACTION (5.16 Å)
Cite:Microfibrillar Structure of Type I Collagen in Situ
Proc.Natl.Acad.Sci.USA, 103, 2006
3IKP
DownloadVisualize
BU of 3ikp by Molmil
Crystal structure of inositol phosphate bound trimeric human lung surfactant protein D
Descriptor: CALCIUM ION, D-MYO-INOSITOL-1-PHOSPHATE, Pulmonary surfactant-associated protein D
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2009-08-06
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325
J.Mol.Biol., 394, 2009
3IKN
DownloadVisualize
BU of 3ikn by Molmil
Crystal structure of galactose bound trimeric human lung surfactant protein D
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, beta-D-galactopyranose
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2009-08-06
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325
J.Mol.Biol., 394, 2009
3IKR
DownloadVisualize
BU of 3ikr by Molmil
Crystal structure of alpha 1-4 mannobiose bound trimeric human lung surfactant protein D
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-mannopyranose
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2009-08-06
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325
J.Mol.Biol., 394, 2009
3IKQ
DownloadVisualize
BU of 3ikq by Molmil
Crystal structure of alpha 1-2 mannobiose bound trimeric human lung surfactant protein D
Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-mannopyranose
Authors:Shrive, A.K, Greenhough, T.J.
Deposit date:2009-08-06
Release date:2009-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325
J.Mol.Biol., 394, 2009
3AH9
DownloadVisualize
BU of 3ah9 by Molmil
Crystal structure of (Pro-Pro-Gly)9 at 1.1 A resolution
Descriptor: ACETIC ACID, AZIDE ION, collagen-like peptide
Authors:Okuyama, K, Morimoto, T, Hongo, C, Hosaka, N, Nishino, N.
Deposit date:2010-04-22
Release date:2011-04-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Crystal structure of (Pro-Pro-Gly)9
To be Published
3AI6
DownloadVisualize
BU of 3ai6 by Molmil
Triple-helical structure of (D-Pro-D-Pro-Gly)9 at 1.1 A resolution
Descriptor: collagen-like peptide
Authors:Okuyama, K, Miyama, K, Kawaguchi, T, Nishino, N.
Deposit date:2010-05-10
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Triple-helical structure of (D-Pro-D-Pro-Gly)9
To be Published
3B0S
DownloadVisualize
BU of 3b0s by Molmil
Crystal Structure of (Gly-Pro-Hyp)9
Descriptor: collagen-like peptide
Authors:Okuyama, K, Miyama, K, Mizuno, K, Bachinger, H.P.
Deposit date:2011-06-14
Release date:2012-05-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of (Gly-Pro-Hyp)(9) : Implications for the collagen molecular model.
Biopolymers, 97, 2012
3B2C
DownloadVisualize
BU of 3b2c by Molmil
Crystal structure of the collagen triple helix model [{PRO-HYP(R)-GLY}4-{HYP(S)-Pro-GLY}2-{PRO-HYP(R)-GLY}4]3
Descriptor: Collagen-like peptide
Authors:Motooka, D, Kawahara, K, Nakamura, S, Doi, M, Nishi, Y, Nishiuchi, Y, Nakazawa, T, Yoshida, T, Ohkubo, T, Kobayashi, Y, Kang, Y.K, Uchiyama, S.
Deposit date:2011-07-26
Release date:2012-04-04
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-pro-gly units
Biopolymers, 98, 2011

 

12>

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon