PDB: 46 resultsInfo pagesStatus searchChemie searchBIRD

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7WWS	Structure of a triple-helix region of human collagen type III from Trautec Descriptor: Collagen alpha-1(III) chain Authors: Qian, S, Li, H, Fan, X, Tian, X, Li, J, Wang, L, Chu, Y. Deposit date: 2022-02-14 Release date: 2022-04-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Structure of a triple-helix region of human collagen type III from Trautec To Be Published
7WWR	Structure of a triple-helix region of human collagen type III from Trautec Descriptor: Collagen alpha-1(III) chain Authors: Qian, S, Li, H, Fan, X, Tian, X, Li, J, Wang, L, Chu, Y. Deposit date: 2022-02-14 Release date: 2022-04-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Structure of a triple-helix region of human collagen type III from Trautec To Be Published
7PKQ	Small subunit of the Chlamydomonas reinhardtii mitoribosome Descriptor: 30S ribosomal protein S9, chloroplastic, Mitochondrial ribosomal protein S13, ... Authors: Waltz, F, Soufari, H, Hashem, Y. Deposit date: 2021-08-26 Release date: 2023-06-14 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: The Chlamydomonas mitochondrial ribosome: how to build a ribosome from RNA fragments To Be Published
7E7D	Cryo-EM structure of the SARS-CoV-2 wild-type S-Trimer from a subunit vaccine candidate Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 9-OCTADECENOIC ACID, ... Authors: Zheng, S, Ma, J. Deposit date: 2021-02-25 Release date: 2021-03-24 Last modified: 2022-12-07 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structure of S-Trimer, a subunit vaccine candidate for COVID-19. J.Virol., 95, 2021
7E7B	Cryo-EM structure of the SARS-CoV-2 furin site mutant S-Trimer from a subunit vaccine candidate Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-hydroxyethyl 2-deoxy-3,5-bis-O-(2-hydroxyethyl)-6-O-(2-{[(9E)-octadec-9-enoyl]oxy}ethyl)-alpha-L-xylo-hexofuranoside, ... Authors: Zheng, S, Ma, J. Deposit date: 2021-02-25 Release date: 2021-03-24 Last modified: 2022-12-07 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Cryo-EM structure of S-Trimer, a subunit vaccine candidate for COVID-19. J.Virol., 95, 2021
7BEE	Crystal structure of a Hsp47-collagen peptide complex Descriptor: 21er collagen model peptide, Collagen-binding protein Authors: Abraham, E.T, Gebauer, J.M, Baumann, U. Deposit date: 2020-12-23 Release date: 2021-11-10 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.939 Å) Cite: Collagen's primary structure determines collagen:HSP47 complex stoichiometry. J.Biol.Chem., 297, 2021
7BDU	Crystal structure of a Hsp47-collagen peptide complex Descriptor: 21er collagen model peptide, Collagen-binding protein Authors: Abraham, E.T, Gebauer, J.M, Baumann, U. Deposit date: 2020-12-22 Release date: 2021-11-10 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Collagen's primary structure determines collagen:HSP47 complex stoichiometry. J.Biol.Chem., 297, 2021
6JEC	Structure of a triple-helix region of human collagen type II Descriptor: human collagen type II Authors: Yang, X, Zhu, Y, Ye, S, Zhang, R. Deposit date: 2019-02-05 Release date: 2020-02-05 Method: X-RAY DIFFRACTION (2.049 Å) Cite: Structure of a triple-helix region of human collagen type II. To Be Published
6HG7	Crystal structure of a collagen II fragment containing the binding site of PEDF and COMP, (POG)4-LKG HRG FTG LQG-POG(4) Descriptor: Collagen alpha-1(II) chain, SULFATE ION Authors: Gebauer, J.M, Koehler, A, Dietmar, H, Gompert, M, Neundorf, I, Zaucke, F, Koch, M, Baumann, U. Deposit date: 2018-08-22 Release date: 2018-12-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1 Å) Cite: COMP and TSP-4 interact specifically with the novel GXKGHR motif only found in fibrillar collagens. Sci Rep, 8, 2018
5OXS	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2017-09-07 Release date: 2018-06-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
5OXR	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R7 oligosaccharide Descriptor: CALCIUM ION, L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid, Pulmonary surfactant-associated protein D Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2017-09-07 Release date: 2018-06-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
5OU9	Crystal structure of Glycoprotein VI in complex with collagen-peptide (GPO)3 Descriptor: (GPO)3, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ... Authors: Feitsma, L.J, Huizinga, E.G. Deposit date: 2017-08-23 Release date: 2018-09-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural insights into collagen-binding by platelet receptor Glycoprotein VI To be Published
5MV4	ACC1 Fab fragment in complex with citrullinated CII616-639 epitope of collagen type II (ptm23) Descriptor: ACC1 antibody Fab fragment, heavy chain, light chain, ... Authors: Dobritzsch, D, Holmdahl, R, Ge, C. Deposit date: 2017-01-15 Release date: 2017-07-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Anti-citrullinated protein antibodies cause arthritis by cross-reactivity to joint cartilage. JCI Insight, 2, 2017
5MV3	ACC1 Fab fragment in complex with CII583-591 (CG10) Descriptor: heavy chain of ACC1 Fab fragment, light chain of ACC1 Fab fragment, synthetic peptide containing the CII583-591 epitope of collagen type II,Collagen alpha-1(II) chain,synthetic peptide containing the CII583-591 epitope of collagen type II, Authors: Dobritzsch, D, Holmdahl, R, Ge, C. Deposit date: 2017-01-15 Release date: 2017-07-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Anti-citrullinated protein antibodies cause arthritis by cross-reactivity to joint cartilage. JCI Insight, 2, 2017
5CVB	Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a1a1 of type I collagen Descriptor: Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain, ... Authors: Boudko, S.P, Bachinger, H.P. Deposit date: 2015-07-25 Release date: 2016-08-10 Last modified: 2017-07-12 Method: X-RAY DIFFRACTION (2.249 Å) Cite: Structural insight for chain selection and stagger control in collagen. Sci Rep, 6, 2016
5CVA	Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a2a1 of type I collagen Descriptor: Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain, Collagen alpha-2(I) chain,Collagen alpha-1(IX) chain, ... Authors: Boudko, S.P, Bachinger, H.P. Deposit date: 2015-07-25 Release date: 2016-08-10 Last modified: 2017-07-12 Method: X-RAY DIFFRACTION (2.098 Å) Cite: Structural insight for chain selection and stagger control in collagen. Sci Rep, 6, 2016
5CTI	Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a2a1a1 of type I collagen (native form) Descriptor: Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain, Collagen alpha-2(I) chain,Collagen alpha-2(IX) chain, ... Authors: Boudko, S.P, Bachinger, H.P. Deposit date: 2015-07-24 Release date: 2016-08-03 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.8994 Å) Cite: Structural insight for chain selection and stagger control in collagen. Sci Rep, 6, 2016
5CTD	Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a2a1a1 of type I collagen Descriptor: Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain, Collagen alpha-2(I) chain,Collagen alpha-2(IX) chain Authors: Boudko, S.P, Bachinger, H.P. Deposit date: 2015-07-23 Release date: 2016-08-03 Last modified: 2017-07-12 Method: X-RAY DIFFRACTION (1.5991 Å) Cite: Structural insight for chain selection and stagger control in collagen. Sci Rep, 6, 2016
4GYX	The von Willebrand Factor A3 domain binding region of type III collagen stabilized by the cysteine knot Descriptor: Type III collagen fragment in a host peptide stabilized by the cysteine knot Authors: Boudko, S.P, Bachinger, H.P. Deposit date: 2012-09-05 Release date: 2012-10-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.49 Å) Cite: The NC2 Domain of Type IX Collagen Determines the Chain Register of the Triple Helix. J.Biol.Chem., 287, 2012
4E52	Crystal structure of Haemophilus Eagan 4A polysaccharide bound human lung surfactant protein D Descriptor: 4,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid-(5-1)-L-glycero-alpha-D-manno-heptopyranose, CALCIUM ION, Pulmonary surfactant-associated protein D Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2012-03-13 Release date: 2013-03-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal Structure of a Complex of Surfactant Protein D (SP-D) and Haemophilus influenzae Lipopolysaccharide Reveals Shielding of Core Structures in SP-D-Resistant Strains. Infect.Immun., 84, 2016
4BJ3	Integrin alpha2 I domain E318W-collagen complex Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, GFOGER PEPTIDE, ... Authors: Carafoli, F, Hamaia, S.W, Bihan, D, Hohenester, E, Farndale, R.W. Deposit date: 2013-04-16 Release date: 2013-11-20 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.042 Å) Cite: An Activating Mutation Reveals a Second Binding Mode of the Integrin Alpha2 I Domain to the Gfoger Motif in Collagens. Plos One, 8, 2013
3IKR	Crystal structure of alpha 1-4 mannobiose bound trimeric human lung surfactant protein D Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-mannopyranose Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2009-08-06 Release date: 2009-11-17 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325 J.Mol.Biol., 394, 2009
3IKQ	Crystal structure of alpha 1-2 mannobiose bound trimeric human lung surfactant protein D Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-mannopyranose Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2009-08-06 Release date: 2009-11-17 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325 J.Mol.Biol., 394, 2009
3IKP	Crystal structure of inositol phosphate bound trimeric human lung surfactant protein D Descriptor: CALCIUM ION, D-MYO-INOSITOL-1-PHOSPHATE, Pulmonary surfactant-associated protein D Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2009-08-06 Release date: 2009-11-17 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325 J.Mol.Biol., 394, 2009
3IKN	Crystal structure of galactose bound trimeric human lung surfactant protein D Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, beta-D-galactopyranose Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2009-08-06 Release date: 2009-11-17 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural characterisation of ligand-binding determinants in human lung surfactant protein D: influence of Asp325 J.Mol.Biol., 394, 2009

 

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