Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6LQF
DownloadVisualize
BU of 6lqf by Molmil
Crystal structure of Arabidopsis ARID5 ARID-PHD cassette in complex with H3K4me3 peptide and DNA
Descriptor: 15-mer peptide from Histone H3.2, AT-rich interactive domain-containing protein 4, DNA (5'-D(*TP*TP*TP*AP*GP*AP*TP*CP*TP*AP*AP*A)-3'), ...
Authors:Liu, R, Du, J.
Deposit date:2020-01-13
Release date:2020-06-03
Last modified:2020-08-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis.
Plant Cell, 32, 2020
2CXY
DownloadVisualize
BU of 2cxy by Molmil
Crystal structure of the hBAF250b AT-rich interaction domain (ARID)
Descriptor: BAF250b subunit
Authors:Shimada, A, Niwa, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-01
Release date:2006-10-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the hBAF250b AT-rich interaction domain (ARID)
To be Published
2EH9
DownloadVisualize
BU of 2eh9 by Molmil
Crystal structure of the HBAF250B at-rich interaction domain (ARID)
Descriptor: AT-rich interactive domain-containing protein 1B, CHLORIDE ION, ZINC ION
Authors:Niwa, H, Shimada, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-05
Release date:2008-03-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the HBAF250B at-rich interaction domain (ARID)
To be Published
7V8N
DownloadVisualize
BU of 7v8n by Molmil
Crystal structure of the PWWP-ARID domain of ARID4A
Descriptor: AT-rich interactive domain-containing protein 4A
Authors:Wei, X, Lin, L, Lu, Q.
Deposit date:2021-08-23
Release date:2022-08-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of the PWWP-ARID of ARID4A
To Be Published
4LJX
DownloadVisualize
BU of 4ljx by Molmil
Crystal structure of an AT-rich interactive domain-containing protein 3A (ARID3A) from Homo sapiens at 2.21 A resolution
Descriptor: AT-rich interactive domain-containing protein 3A
Authors:Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology (STEMCELL)
Deposit date:2013-07-05
Release date:2013-08-28
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structure of an AT-rich interactive domain-containing protein 3A (ARID3A) from Homo sapiens at 2.21 A resolution
To be published
7C4J
DownloadVisualize
BU of 7c4j by Molmil
Cryo-EM structure of the yeast Swi/Snf complex in a nucleosome free state
Descriptor: Actin-like protein ARP9, Actin-related protein 7, Regulator of Ty1 transposition protein 102, ...
Authors:Wang, C.C, Guo, Z.Y, Zhan, X.C, Zhang, X.F.
Deposit date:2020-05-18
Release date:2020-07-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Structure of the yeast Swi/Snf complex in a nucleosome free state
Nat Commun, 2020
5V9P
DownloadVisualize
BU of 5v9p by Molmil
Crystal structure of pyrrolidine amide inhibitor [(3S)-3-(4-bromo-1H-pyrazol-1-yl)pyrrolidin-1-yl][3-(propan-2-yl)-1H-pyrazol-5-yl]methanone (compound 35) in complex with KDM5A
Descriptor: Lysine-specific demethylase 5A, NICKEL (II) ION, SULFATE ION, ...
Authors:Kiefer, J.R, Liang, J, Vinogradova, M.
Deposit date:2017-03-23
Release date:2017-05-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:From a novel HTS hit to potent, selective, and orally bioavailable KDM5 inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
6LTH
DownloadVisualize
BU of 6lth by Molmil
Structure of human BAF Base module
Descriptor: AT-rich interactive domain-containing protein 1A, SWI/SNF complex subunit SMARCC2, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, ...
Authors:He, S, Wu, Z, Tian, Y, Yu, Z, Yu, J, Wang, X, Li, J, Liu, B, Xu, Y.
Deposit date:2020-01-22
Release date:2020-02-12
Last modified:2021-10-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of nucleosome-bound human BAF complex.
Science, 367, 2020
5V9T
DownloadVisualize
BU of 5v9t by Molmil
Crystal structure of selective pyrrolidine amide KDM5a inhibitor N-{(3R)-1-[3-(propan-2-yl)-1H-pyrazole-5-carbonyl]pyrrolidin-3-yl}cyclopropanecarboxamide (compound 48)
Descriptor: Lysine-specific demethylase 5A, N-{(3R)-1-[3-(propan-2-yl)-1H-pyrazole-5-carbonyl]pyrrolidin-3-yl}cyclopropanecarboxamide, NICKEL (II) ION, ...
Authors:Kiefer, J.R, Liang, J, Vinogradova, M.
Deposit date:2017-03-23
Release date:2017-05-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:From a novel HTS hit to potent, selective, and orally bioavailable KDM5 inhibitors.
Bioorg. Med. Chem. Lett., 27, 2017
5CEH
DownloadVisualize
BU of 5ceh by Molmil
Structure of histone lysine demethylase KDM5A in complex with selective inhibitor
Descriptor: 7-oxo-5-phenyl-6-(propan-2-yl)-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carbonitrile, Lysine-specific demethylase 5A, NICKEL (II) ION, ...
Authors:Kiefer, J.R, Vinogradova, M.
Deposit date:2015-07-06
Release date:2016-05-18
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:An inhibitor of KDM5 demethylases reduces survival of drug-tolerant cancer cells.
Nat.Chem.Biol., 12, 2016
5K4L
DownloadVisualize
BU of 5k4l by Molmil
Crystal structure of KDM5A in complex with a naphthyridone inhibitor
Descriptor: Lysine-specific demethylase 5A, NICKEL (II) ION, Unknown Peptide, ...
Authors:Kiefer, J.R, Vinogradova, M.V.
Deposit date:2016-05-20
Release date:2016-08-10
Last modified:2016-09-07
Method:X-RAY DIFFRACTION (3.179 Å)
Cite:Design and evaluation of 1,7-naphthyridones as novel KDM5 inhibitors.
Bioorg.Med.Chem.Lett., 26, 2016
8FYH
DownloadVisualize
BU of 8fyh by Molmil
G4 RNA-mediated PRC2 dimer
Descriptor: G4 RNA, Histone-binding protein RBBP4, Histone-lysine N-methyltransferase EZH2, ...
Authors:Song, J, Kasinath, V.
Deposit date:2023-01-26
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for inactivation of PRC2 by G-quadruplex RNA.
Science, 381, 2023
7VDV
DownloadVisualize
BU of 7vdv by Molmil
The overall structure of human chromatin remodeling PBAF-nucleosome complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, AT-rich interactive domain-containing protein 2,AT-rich interactive domain-containing protein 2, Actin, ...
Authors:Chen, Z.C, Chen, K.J, Yuan, J.J.
Deposit date:2021-09-07
Release date:2022-05-18
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of human chromatin-remodelling PBAF complex bound to a nucleosome.
Nature, 605, 2022
7EGM
DownloadVisualize
BU of 7egm by Molmil
The SRM module of SWI/SNF-nucleosome complex
Descriptor: SWI/SNF chromatin-remodeling complex subunit SNF5, SWI/SNF chromatin-remodeling complex subunit SWI1, SWI/SNF complex subunit SWI3, ...
Authors:Chen, Z.C, Chen, K.J, He, Z.Y, Ye, Y.P.
Deposit date:2021-03-24
Release date:2022-01-12
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of the SWI/SNF complex bound to the nucleosome and insights into the functional modularity.
Cell Discov, 7, 2021
6LTJ
DownloadVisualize
BU of 6ltj by Molmil
Structure of nucleosome-bound human BAF complex
Descriptor: AT-rich interactive domain-containing protein 1A, Actin, cytoplasmic 1, ...
Authors:He, S, Wu, Z, Tian, Y, Yu, Z, Yu, J, Wang, X, Li, J, Liu, B, Xu, Y.
Deposit date:2020-01-22
Release date:2020-02-12
Last modified:2021-10-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of nucleosome-bound human BAF complex.
Science, 367, 2020
7KSO
DownloadVisualize
BU of 7kso by Molmil
Cryo-EM structure of PRC2:EZH1-AEBP2-JARID2
Descriptor: Histone-binding protein RBBP4, Histone-lysine N-methyltransferase EZH1, Polycomb protein EED, ...
Authors:Grau, D.J, Armache, K.J.
Deposit date:2020-11-23
Release date:2021-02-03
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structures of monomeric and dimeric PRC2:EZH1 reveal flexible modules involved in chromatin compaction.
Nat Commun, 12, 2021
7Y8R
DownloadVisualize
BU of 7y8r by Molmil
The nucleosome-bound human PBAF complex
Descriptor: ACTB protein (Fragment), ADENOSINE-5'-DIPHOSPHATE, AT-rich interactive domain-containing protein 2, ...
Authors:Wang, L, Yu, J, Yu, Z, Wang, Q, He, S, Xu, Y.
Deposit date:2022-06-24
Release date:2022-12-07
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structure of nucleosome-bound human PBAF complex.
Nat Commun, 13, 2022
6UXV
DownloadVisualize
BU of 6uxv by Molmil
SWI/SNF Body Module
Descriptor: SWI/SNF chromatin-remodeling complex subunit SNF5, SWI/SNF chromatin-remodeling complex subunit SWI1, SWI/SNF complex subunit SWI3, ...
Authors:He, Y, Han, Y.
Deposit date:2019-11-08
Release date:2020-03-18
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Cryo-EM structure of SWI/SNF complex bound to a nucleosome.
Nature, 579, 2020
7EGP
DownloadVisualize
BU of 7egp by Molmil
The structure of SWI/SNF-nucleosome complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin-like protein ARP9, Actin-related protein 7, ...
Authors:Chen, Z.C, Chen, K.J, He, Z.Y, Ye, Y.P.
Deposit date:2021-03-24
Release date:2022-01-12
Method:ELECTRON MICROSCOPY (6.9 Å)
Cite:Structure of the SWI/SNF complex bound to the nucleosome and insights into the functional modularity.
Cell Discov, 7, 2021
6UXW
DownloadVisualize
BU of 6uxw by Molmil
SWI/SNF nucleosome complex with ADP-BeFx
Descriptor: 601 sequence bottom strand, 601 sequence top strand, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:He, Y, Han, Y.
Deposit date:2019-11-08
Release date:2020-03-18
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (8.96 Å)
Cite:Cryo-EM structure of SWI/SNF complex bound to a nucleosome.
Nature, 579, 2020
1IG6
DownloadVisualize
BU of 1ig6 by Molmil
HUMAN MRF-2 DOMAIN, NMR, 11 STRUCTURES
Descriptor: MODULATOR RECOGNITION FACTOR 2
Authors:Lin, D, Tsui, V, Case, D, Yuan, Y.C, Chen, Y.
Deposit date:2001-04-17
Release date:2001-04-25
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:HUMAN MRF-2 DOMAIN, NMR, 11 STRUCTURES
To be Published
2OEH
DownloadVisualize
BU of 2oeh by Molmil
Determination of the Three-dimensional Structure of the Mrf2-DNA Complex Using Paramagnetic Spin Labeling
Descriptor: 5'-D(P*CP*GP*AP*CP*GP*TP*TP*AP*TP*AP*TP*TP*GP*T)-3', 5'-D(P*TP*AP*CP*AP*AP*TP*AP*TP*AP*AP*CP*GP*TP*CP*G)-3', AT-rich interactive domain-containing protein 5B
Authors:Cai, S, Zhu, L, Zhang, Z.
Deposit date:2006-12-29
Release date:2007-08-07
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Determination of the three-dimensional structure of the Mrf2-DNA complex using paramagnetic spin labeling.
Biochemistry, 46, 2007
1C20
DownloadVisualize
BU of 1c20 by Molmil
SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN FROM THE DEAD RINGER PROTEIN
Descriptor: DEAD RINGER PROTEIN
Authors:Iwahara, J, Clubb, R.T.
Deposit date:1999-07-22
Release date:1999-11-10
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of the DNA binding domain from Dead ringer, a sequence-specific AT-rich interaction domain (ARID).
EMBO J., 18, 1999
1KN5
DownloadVisualize
BU of 1kn5 by Molmil
SOLUTION STRUCTURE OF ARID DOMAIN OF ADR6 FROM SACCHAROMYCES CEREVISIAE
Descriptor: Transcription regulatory protein ADR6
Authors:Tu, X, Wu, J, Xu, Y, Shi, Y.
Deposit date:2001-12-18
Release date:2002-07-17
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:1H, 13C and 15N resonance assignments and secondary structure of ADR6 DNA-binding domain.
J.Biomol.Nmr, 21, 2001
1KQQ
DownloadVisualize
BU of 1kqq by Molmil
Solution Structure of the Dead ringer ARID-DNA Complex
Descriptor: 5'-D(*CP*CP*AP*CP*AP*TP*CP*AP*AP*TP*AP*CP*AP*GP*G)-3', 5'-D(*CP*CP*TP*GP*TP*AP*TP*TP*GP*AP*TP*GP*TP*GP*G)-3', DEAD RINGER PROTEIN
Authors:Iwahara, J, Iwahara, M, Daughdrill, G.W, Ford, J, Clubb, R.T.
Deposit date:2002-01-07
Release date:2002-03-06
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:The structure of the Dead ringer-DNA complex reveals how AT-rich interaction domains (ARIDs) recognize DNA.
EMBO J., 21, 2002

 

12>

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon