Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8W7F
DownloadVisualize
BU of 8w7f by Molmil
Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase bound with FAD and a sulfate ion
Descriptor: DODECYL-BETA-D-MALTOSIDE, FI05204p, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Yang, J, Chen, X, Jin, S, Ding, J.
Deposit date:2023-08-30
Release date:2023-11-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:Structure and biochemical characterization of l-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of l-2-hydroxyglutaric aciduria.
J.Biol.Chem., 300, 2023
8W78
DownloadVisualize
BU of 8w78 by Molmil
Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase in complex with FAD and 2-oxoglutarate
Descriptor: 2-OXOGLUTARIC ACID, DODECYL-BETA-D-MALTOSIDE, FI05204p, ...
Authors:Yang, J, Chen, X, Jin, S, Ding, J.
Deposit date:2023-08-30
Release date:2023-11-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structure and biochemical characterization of l-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of l-2-hydroxyglutaric aciduria.
J.Biol.Chem., 300, 2023
8W75
DownloadVisualize
BU of 8w75 by Molmil
Structure of Drosophila melanogaster L-2-hydroxyglutarate dehydrogenase
Descriptor: DODECYL-BETA-D-MALTOSIDE, FI05204p, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Yang, J, Chen, X, Jin, S, Ding, J.
Deposit date:2023-08-30
Release date:2023-11-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure and biochemical characterization of l-2-hydroxyglutarate dehydrogenase and its role in the pathogenesis of l-2-hydroxyglutaric aciduria.
J.Biol.Chem., 300, 2023
8HY5
DownloadVisualize
BU of 8hy5 by Molmil
Structure of D-amino acid oxidase mutant R38H
Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, D-amino-acid oxidase, ...
Authors:Khan, S, Upadhyay, S, Dave, U, Kumar, A, Gomes, J.
Deposit date:2023-01-05
Release date:2023-01-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and mechanistic insights into ALS patient derived mutations in D-amino acid oxidase.
Int.J.Biol.Macromol., 256, 2023
8GRI
DownloadVisualize
BU of 8gri by Molmil
Orf1-E312A-glycine-glycylthricin
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-09-01
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.365 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
8BMU
DownloadVisualize
BU of 8bmu by Molmil
Engineered Fructosyl Peptide Oxidase - X04 mutant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Fructosyl Peptide Oxidase mutant (X04), ...
Authors:Estiri, H, Bhattacharya, S, Rodriguez-Buitrago, J.A, Parisini, E.
Deposit date:2022-11-11
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Engineered Fructosyl Peptide Oxidase - X04 mutant
To Be Published
8BLZ
DownloadVisualize
BU of 8blz by Molmil
Engineered Fructosyl Peptide Oxidase - D02 mutant
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Fructosyl Peptide Oxidase mutant (D02), GLYCEROL, ...
Authors:Estiri, H, Bhattacharya, S, Rodriguez-Buitrago, J.A, Parisini, E.
Deposit date:2022-11-10
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Fructosyl Peptide Oxidase mutant (D02)
To Be Published
8BLX
DownloadVisualize
BU of 8blx by Molmil
Engineered Fructosyl Peptide Oxidase - X02A mutant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, Fructosyl Peptide Oxidase mutant (X02A), ...
Authors:Estiri, H, Bhattacharya, S, Rodriguez-Buitrago, J.A, Parisini, E.
Deposit date:2022-11-10
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Engineered Fructosyl Peptide Oxidase - X02A mutant
To Be Published
8BJY
DownloadVisualize
BU of 8bjy by Molmil
Engineered Fructosyl Peptide Oxidase - X02B mutant
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Fructosyl Peptide Oxidase mutant (X02B), GLYCEROL
Authors:Estiri, H, Bhattacharya, S, Rodriguez-Buitrago, J.A, Parisini, E.
Deposit date:2022-11-08
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.475 Å)
Cite:Engineered Fructosyl Peptide Oxidase - X02B mutant
To Be Published
7Y0X
DownloadVisualize
BU of 7y0x by Molmil
Orf1-glycine complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-06-06
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XYL
DownloadVisualize
BU of 7xyl by Molmil
E426Q-glycine-glycylthricin complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-06-01
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XYE
DownloadVisualize
BU of 7xye by Molmil
The apo structure of Orf1
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, N-formimidoyl fortimicin A synthase
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-06-01
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.482 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XXR
DownloadVisualize
BU of 7xxr by Molmil
Orf1 R342A-glycylthricin complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, N-formimidoyl fortimicin A synthase, [(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(~{E})-[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-3,3~{a},5,6,7,7~{a}-hexahydro-1~{H}-imidazo[4,5-c]pyridin-2-ylidene]amino]-5-(2-azanylethanoylamino)-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-05-30
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XXP
DownloadVisualize
BU of 7xxp by Molmil
F316A-glycine-streptothricin F complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-05-30
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.052 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XXM
DownloadVisualize
BU of 7xxm by Molmil
Orf1-glycine-4-aminobutylthricin complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-05-30
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.119 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XXD
DownloadVisualize
BU of 7xxd by Molmil
Orf1-sarcosine complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, N-formimidoyl fortimicin A synthase, SARCOSINE
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-05-29
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.982 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XXC
DownloadVisualize
BU of 7xxc by Molmil
Orf1-glycine-glycylthricin complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-05-29
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.989 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XX0
DownloadVisualize
BU of 7xx0 by Molmil
C281S glycylthricin complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase, ...
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-05-27
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry.
Nat Commun, 14, 2023
7XQA
DownloadVisualize
BU of 7xqa by Molmil
Orf1-glycine complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, N-formimidoyl fortimicin A synthase
Authors:Wang, Y.L, Li, T.L.
Deposit date:2022-05-07
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:N-Formimidoylation/-iminoacetylation modification in aminoglycosides requires FAD-dependent and ligand-protein NOS bridge dual chemistry
Nat Commun, 14, 2023
7U9U
DownloadVisualize
BU of 7u9u by Molmil
Crystal structure of human D-amino acid oxidase in complex with inhibitor
Descriptor: (3R)-3-(5,6-dioxo-1,4,5,6-tetrahydropyrazin-2-yl)-2,3-dihydro-1,4-benzoxathiine-7-carbonitrile, BENZOIC ACID, D-amino-acid oxidase, ...
Authors:Skene, R.J, Bell, J.A.
Deposit date:2022-03-11
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Discovery of a Novel Class of d-Amino Acid Oxidase Inhibitors Using the Schrodinger Computational Platform.
J.Med.Chem., 65, 2022
7U9S
DownloadVisualize
BU of 7u9s by Molmil
Crystal structure of human D-amino acid oxidase in complex with inhibitor
Descriptor: 5-{2-[4-(trifluoromethyl)phenyl]ethyl}-1,4-dihydropyrazine-2,3-dione, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Skene, R.J, Bell, J.A.
Deposit date:2022-03-11
Release date:2022-06-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of a Novel Class of d-Amino Acid Oxidase Inhibitors Using the Schrodinger Computational Platform.
J.Med.Chem., 65, 2022
7RDF
DownloadVisualize
BU of 7rdf by Molmil
Crystal structure of Pseudomonas aeruginosa D-Arginine Dehydrogenase Y249F co-crystallized in the presence of D-arginine
Descriptor: 6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE, DI(HYDROXYETHYL)ETHER, FAD-dependent catabolic D-arginine dehydrogenase DauA, ...
Authors:Reis, R.A.G, Iyer, A, Agniswamy, A, Weber, I.T, Gadda, G.
Deposit date:2021-07-09
Release date:2021-12-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Discovery of a new flavin N5-adduct in a tyrosine to phenylalanine variant of d-Arginine dehydrogenase.
Arch.Biochem.Biophys., 715, 2021
7LO1
DownloadVisualize
BU of 7lo1 by Molmil
FAD-dependent monooxygenase AfoD from A. nidulans
Descriptor: FAD-dependent monooxygenase afoD, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Rodriguez Benitez, A, Smith, J.L, Narayan, A.R.H.
Deposit date:2021-02-08
Release date:2022-04-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction.
Proc.Natl.Acad.Sci.USA, 120, 2023
7FGP
DownloadVisualize
BU of 7fgp by Molmil
Crystal structure of Aureimonas altamirenisis flavin-containing opine dehydrogenase (FAD-bound form)
Descriptor: DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Yoshiwara, K, Watanabe, Y, Watanabe, S.
Deposit date:2021-07-27
Release date:2022-08-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structural basis for Flavin-containing opine dehydrogenase from Aureimonas altamirensis
To Be Published
7EXS
DownloadVisualize
BU of 7exs by Molmil
Thermomicrobium roseum sarcosine oxidase mutant - S320R
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Xin, Y, Shen, C, Tang, M.W, Shi, Y, Guo, Z.T, Gu, Z.H, Shao, J, Zhang, L.
Deposit date:2021-05-28
Release date:2021-07-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Recreating the natural evolutionary trend in key microdomains provides an effective strategy for engineering of a thermomicrobial N-demethylase.
J.Biol.Chem., 298, 2022

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon