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5NM8
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BU of 5nm8 by Molmil
Structure of PipY, the COG0325 family member of Synechococcus elongatus PCC7942, with PLP bound
Descriptor: CALCIUM ION, PYRIDOXAL-5'-PHOSPHATE, PipY
Authors:Tremino, L, Forcada-Nadal, A, Contreras, A, Rubio, V.
Deposit date:2017-04-05
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Studies on cyanobacterial protein PipY shed light on structure, potential functions, and vitamin B6 -dependent epilepsy.
FEBS Lett., 591, 2017
6KZW
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BU of 6kzw by Molmil
Crystal structure of YggS family pyridoxal phosphate-dependent enzyme PipY from Fusobacterium nucleatum
Descriptor: PHOSPHATE ION, Pyridoxal phosphate homeostasis protein
Authors:Chen, Y, Wang, L, Shang, F, Lan, J, Liu, W, Xu, Y.
Deposit date:2019-09-25
Release date:2019-10-16
Last modified:2021-01-13
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structure of YggS family pyridoxal phosphate-dependent enzyme PipY from Fusobacterium nucleatum
To Be Published
1B54
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BU of 1b54 by Molmil
CRYSTAL STRUCTURE OF A YEAST HYPOTHETICAL PROTEIN-A STRUCTURE FROM BNL'S HUMAN PROTEOME PROJECT
Descriptor: PYRIDOXAL-5'-PHOSPHATE, YEAST HYPOTHETICAL PROTEIN
Authors:Swaminathan, S, Eswaramoorthy, S, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:1999-01-12
Release date:1999-01-27
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of a yeast hypothetical protein selected by a structural genomics approach.
Acta Crystallogr.,Sect.D, 59, 2003
5NLC
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BU of 5nlc by Molmil
Structure of PipY, the COG0325 family member of Synechococcus elongatus PCC7942,without PLP
Descriptor: PHOSPHATE ION, PipY
Authors:Tremino, L, Forcada-Nadal, A, Contreras, A, Rubio, V.
Deposit date:2017-04-04
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Studies on cyanobacterial protein PipY shed light on structure, potential functions, and vitamin B6 -dependent epilepsy.
FEBS Lett., 591, 2017
7F8E
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BU of 7f8e by Molmil
Crystal structure of YggS from Fusobacterium nucleatum
Descriptor: Pyridoxal phosphate homeostasis protein, SULFATE ION
Authors:Wang, L, Chen, Y, Bu, T, Bai, X.
Deposit date:2021-07-02
Release date:2022-01-12
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structure of YggS from Fusobacterium nucleatum
To Be Published
3R79
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BU of 3r79 by Molmil
Crystal structure of an uncharactertized protein from Agrobacterium tumefaciens
Descriptor: ACETATE ION, PRASEODYMIUM ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Eswaramoorthy, S, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2011-03-22
Release date:2011-04-06
Last modified:2012-02-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of an uncharactertized protein from Agrobacterium tumefaciens
To be Published
1CT5
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BU of 1ct5 by Molmil
CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YBL036C-SELENOMET CRYSTAL
Descriptor: PROTEIN (YEAST HYPOTHETICAL PROTEIN, SELENOMET), PYRIDOXAL-5'-PHOSPHATE
Authors:Eswaramoorthy, S, Swaminathan, S, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:1999-08-18
Release date:1999-09-02
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a yeast hypothetical protein selected by a structural genomics approach.
Acta Crystallogr.,Sect.D, 59, 2003
7YGF
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BU of 7ygf by Molmil
Crystal structure of YggS from Fusobacterium nucleatum
Descriptor: Pyridoxal phosphate homeostasis protein, SULFATE ION
Authors:He, S.R, Chan, Y.Y, Wang, L.L, Bai, X, Bu, T.T, Zhang, J, Xu, Y.B.
Deposit date:2022-07-11
Release date:2022-10-12
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural and Functional Analysis of the Pyridoxal Phosphate Homeostasis Protein YggS from Fusobacterium nucleatum.
Molecules, 27, 2022
1W8G
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BU of 1w8g by Molmil
CRYSTAL STRUCTURE OF E. COLI K-12 YGGS
Descriptor: HYPOTHETICAL UPF0001 PROTEIN YGGS, ISOCITRIC ACID, PYRIDOXAL-5'-PHOSPHATE
Authors:Sulzenbacher, G, Gruez, A, Spinelli, S, Roig-Zamboni, V, Pagot, F, Bignon, C, Vincentelli, R, Cambillau, C.
Deposit date:2004-09-21
Release date:2006-07-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of E. Coli K-12 Yggs
To be Published
3SY1
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BU of 3sy1 by Molmil
Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR70
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETIC ACID, UPF0001 protein yggS
Authors:Vorobiev, S, Su, M, Nivon, L, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Maglaqui, M, Baker, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2011-07-15
Release date:2011-08-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.465 Å)
Cite:Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR70
To be Published
7U9C
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BU of 7u9c by Molmil
Crystal Structure of the wild type Escherichia coli Pyridoxal 5'-phosphate homeostasis protein (YGGS)
Descriptor: PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, Pyridoxal phosphate homeostasis protein
Authors:Donkor, A.K, Ghatge, M.S, Safo, M.K, Musayev, F.N.
Deposit date:2022-03-10
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability.
Protein Sci., 31, 2022
7UAX
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BU of 7uax by Molmil
The crystal structure of the K36A/K38A double mutant of E. coli YGGS in complex with PLP
Descriptor: PHOSPHATE ION, Pyridoxal phosphate homeostasis protein
Authors:Donkor, A.K, Ghatge, M.S, Musayev, F.N, Safo, M.K.
Deposit date:2022-03-14
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability.
Protein Sci., 31, 2022
7UBQ
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BU of 7ubq by Molmil
The crystal structure of the wild-type of E. coli YGGS in complex with PNP
Descriptor: PYRIDOXINE-5'-PHOSPHATE, Pyridoxal phosphate homeostasis protein
Authors:Donkor, A.K, Ghatge, M.S, Musayev, F.N, Safo, M.K.
Deposit date:2022-03-15
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability.
Protein Sci., 31, 2022
7UAT
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BU of 7uat by Molmil
The crystal structure of the K36A mutant of E. coli YGGS in complex with PLP
Descriptor: PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, Pyridoxal phosphate homeostasis protein
Authors:Donkor, A.K, Ghatge, M.S, Musayev, F.N, Safo, M.K.
Deposit date:2022-03-14
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability.
Protein Sci., 31, 2022
7UBP
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BU of 7ubp by Molmil
The crystal structure of the K36A/K137A double mutant of E. coli YGGS in complex with PLP
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Pyridoxal phosphate homeostasis protein, SULFATE ION
Authors:Donkor, A.K, Ghatge, M.S, Musayev, F.N, Safo, M.K.
Deposit date:2022-03-15
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability.
Protein Sci., 31, 2022
7UAU
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BU of 7uau by Molmil
The crystal structure of the K137A mutant of E. coli YGGS in complex with PLP
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Pyridoxal phosphate homeostasis protein, SULFATE ION
Authors:Donkor, A.K, Ghatge, M.S, Musayev, F.N, Safo, M.K.
Deposit date:2022-03-14
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability.
Protein Sci., 31, 2022
7U9H
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BU of 7u9h by Molmil
Crystal Structure of Escherichia coli apo Pyridoxal 5'-phosphate homeostasis protein (YGGS)
Descriptor: Pyridoxal phosphate homeostasis protein, SULFATE ION
Authors:Donkor, A.K, Ghatge, M.S, Musayev, F.N, Safo, M.K.
Deposit date:2022-03-10
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability.
Protein Sci., 31, 2022
7UB8
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BU of 7ub8 by Molmil
The crystal structure of the K38A/K137A/K233A/K234A quadruple mutant of E. coli YGGS in complex with PLP
Descriptor: 1,4-BUTANEDIOL, PYRIDOXAL-5'-PHOSPHATE, Pyridoxal phosphate homeostasis protein
Authors:Donkor, A.K, Ghatge, M.S, Musayev, F.N, Safo, M.K.
Deposit date:2022-03-14
Release date:2022-03-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability.
Protein Sci., 31, 2022
7UB4
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BU of 7ub4 by Molmil
The crystal structure of the K36A/K38A/K233A/K234A quadruple mutant of E. coli YGGS in complex with PLP
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Pyridoxal phosphate homeostasis protein
Authors:Donkor, A.K, Ghatge, M.S, Musayev, F.N, Safo, M.K.
Deposit date:2022-03-14
Release date:2022-03-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Characterization of the Escherichia coli pyridoxal 5'-phosphate homeostasis protein (YggS): Role of lysine residues in PLP binding and protein stability.
Protein Sci., 31, 2022
3CPG
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BU of 3cpg by Molmil
Crystal structure of an unknown protein from Bifidobacterium adolescentis
Descriptor: ACETATE ION, Uncharacterized protein
Authors:Sugadev, R, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-03-31
Release date:2008-05-13
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of an unknown protein from Bifidobacterium adolescentis.
To be Published
4V15
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BU of 4v15 by Molmil
Crystal structure of D-threonine aldolase from Alcaligenes xylosoxidans
Descriptor: D-THREONINE ALDOLASE, MANGANESE (II) ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Uhl, M.K, Oberdorfer, G, Steinkellner, G, Riegler, L, Schuermann, M, Gruber, K.
Deposit date:2014-09-24
Release date:2015-03-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Crystal Structure of D-Threonine Aldolase from Alcaligenes Xylosoxidans Provides Insight Into a Metal Ion Assisted Plp-Dependent Mechanism.
Plos One, 10, 2015
7DIB
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BU of 7dib by Molmil
Crystal structure of D-threonine aldolase from Filomicrobium marinum
Descriptor: D-threonine aldolase
Authors:Seo, H, Kim, K.-J.
Deposit date:2020-11-18
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Cbeta-Selective Aldol Addition of d-Threonine Aldolase by Spatial Constraint of Aldehyde Binding.
Acs Catalysis, 11, 2021
7YQA
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BU of 7yqa by Molmil
Crystal structure of D-threonine aldolase from Chlamydomonas reinhardtii
Descriptor: D-threonine aldolase, MAGNESIUM ION
Authors:Hirato, Y, Goto, M, Mizobuchi, T, Muramatsu, H, Tanigawa, M, Nishimura, K.
Deposit date:2022-08-05
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of pyridoxal 5'-phosphate-bound D-threonine aldolase from Chlamydomonas reinhardtii.
Acta Crystallogr.,Sect.F, 79, 2023
4KBX
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BU of 4kbx by Molmil
Crystal structure of the pyridoxal-5'-phosphate dependent protein yhfx from escherichia coli
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Fedorov, A.A, Fedorov, E.V, Xiang, D.F, Raushel, F.M, Almo, S.C.
Deposit date:2013-04-24
Release date:2014-05-21
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Crystal structure of the pyridoxal-5'-phosphate dependent protein yhfx from escherichia coli
To be Published
6QKB
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BU of 6qkb by Molmil
Crystal structure of the beta-hydroxyaspartate aldolase of Paracoccus denitrificans
Descriptor: D-3-hydroxyaspartate aldolase, MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Zarzycki, J, Schada von Borzyskowski, L, Gilardet, A, Erb, T.J.
Deposit date:2019-01-28
Release date:2019-08-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Marine Proteobacteria metabolize glycolate via the beta-hydroxyaspartate cycle.
Nature, 575, 2019

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PDB entries from 2024-03-27

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