PDB: 113 resultsInfo pagesStatus searchChemie searchBIRD

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6N6J	Human REXO2 bound to pAA Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.317 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6K	Human REXO2 bound to pAG Descriptor: MALONATE ION, RNA (5'-R(P*AP*G)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.418 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6I	Human REXO2 bound to pGG Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.431 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6A	Vibrio cholerae Oligoribonuclease bound to pGG Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*G)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.5 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
2QXF	Product bound structure of exonuclease I at 1.5 angstrom resolution Descriptor: Exodeoxyribonuclease I, MAGNESIUM ION, SODIUM ION, ... Authors: Busam, R.D. Deposit date: 2007-08-11 Release date: 2008-01-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structure of Escherichia coli exonuclease I in complex with thymidine 5'-monophosphate. Acta Crystallogr.,Sect.D, 64, 2008
6N6D	Vibrio cholerae Oligoribonuclease bound to pAG Descriptor: Oligoribonuclease, RNA (5'-R(P*AP*G)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.534 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
3HL8	Crystal structure of exonuclease I in complex with inhibitor BCBP Descriptor: (5R)-3-tert-butyl-1-(6-chloro-1,3-benzothiazol-2-yl)-4,5-dihydro-1H-pyrazol-5-ol, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ... Authors: Satyshur, K.A. Deposit date: 2009-05-27 Release date: 2010-01-19 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Small-molecule tools for dissecting the roles of SSB/protein interactions in genome maintenance Proc.Natl.Acad.Sci.USA, 107, 2010
7LPZ	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
6N6E	Vibrio cholerae Oligoribonuclease bound to pGA Descriptor: RNA (5'-R(P*GP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.578 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
1W0H	Crystallographic structure of the nuclease domain of 3'hExo, a DEDDh family member, bound to rAMP Descriptor: 3'-5' EXONUCLEASE ERI1, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION Authors: Cheng, Y, Patel, D. Deposit date: 2004-06-04 Release date: 2004-09-30 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Crystallographic Structure of the Nuclease Domain of 3'Hexo, a Deddh Family Member, Bound to Ramp J.Mol.Biol., 343, 2004
2GUI	Structure and Function of Cyclized Versions of the Proofreading Exonuclease Subunit of E. coli DNA Polymerase III Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, DNA polymerase III epsilon subunit, ... Authors: Park, A.Y, Carr, P.D, Ollis, D.L, Dixon, N.E. Deposit date: 2006-04-30 Release date: 2007-03-13 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure and Function of Cyclized Versions of the Proofreading Exonuclease Subunit E. coli DNA Polymerase III To be Published
3HP9	Crystal structure of SSB/Exonuclease I in complex with inhibitor CFAM Descriptor: 1,2-ETHANEDIOL, 2-{[2-chloro-5-(trifluoromethyl)phenyl]amino}-5-methoxybenzoic acid, DIMETHYL SULFOXIDE, ... Authors: Satyshur, K.A. Deposit date: 2009-06-03 Release date: 2010-01-19 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Small-molecule tools for dissecting the roles of SSB/protein interactions in genome maintenance Proc.Natl.Acad.Sci.USA, 107, 2010
7LQ0	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
6N6C	Vibrio cholerae Oligoribonuclease bound to pAA Descriptor: RNA (5'-R(P*AP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.619 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
3C95	Exonuclease I (apo) Descriptor: Exodeoxyribonuclease I, MAGNESIUM ION Authors: Keck, J.L, Lu, D. Deposit date: 2008-02-15 Release date: 2008-07-08 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural basis of Escherichia coli single-stranded DNA-binding protein stimulation of exonuclease I. Proc.Natl.Acad.Sci.USA, 105, 2008
1J54	Structure of the N-terminal exonuclease domain of the epsilon subunit of E.coli DNA polymerase III at pH 5.8 Descriptor: 1,2-ETHANEDIOL, DNA polymerase III, epsilon chain, ... Authors: Hamdan, S, Carr, P.D, Brown, S.E, Ollis, D.L, Dixon, N.E. Deposit date: 2002-01-22 Release date: 2002-10-16 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural Basis for Proofreading during Replication of the Escherichia coli Chromosome Structure, 10, 2002
2IGI	Crystal Structure of E. coli Oligoribonuclease Descriptor: ACETIC ACID, CADMIUM ION, Oligoribonuclease, ... Authors: Zuo, Y, Malhotra, A. Deposit date: 2006-09-22 Release date: 2007-10-02 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal Structure of Oligoribonuclease, the lone essential exoribonuclease in Escherichia coli To be Published
7V5H	VcOrn native structure with N terminal tag Descriptor: Oligoribonuclease Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-17 Release date: 2021-12-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of oligoribonuclease from Vibrio cholerae O1 El Tor with bound peptide. Acta Crystallogr.,Sect.F, 77, 2021
3V9W	Crystal structure of RNase T in complex with a preferred ssDNA (TTA) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*CP*TP*TP*A)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.702 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
6N6F	Vibrio cholerae Oligoribonuclease bound to pGC Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*C)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.735 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6H	Vibrio cholerae Oligoribonuclease bound to pCpU Descriptor: Oligoribonuclease, RNA (5'-R(P*CP*U)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.757 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
7VA3	PaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structure Descriptor: IMIDAZOLE, MANGANESE (II) ION, Oligoribonuclease, ... Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-27 Release date: 2022-09-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: PaOrn Oligoribonuclease D11A mutant with substrate pGpG complex structure To Be Published
1J53	Structure of the N-terminal Exonuclease Domain of the Epsilon Subunit of E.coli DNA Polymerase III at pH 8.5 Descriptor: 1,2-ETHANEDIOL, DNA polymerase III, epsilon chain, ... Authors: Hamdan, S, Carr, P.D, Brown, S.E, Ollis, D.L, Dixon, N.E. Deposit date: 2002-01-22 Release date: 2002-10-16 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Basis for Proofreading during Replication of the Escherichia coli Chromosome Structure, 10, 2002
3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
4KB1	Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT ) Descriptor: Bulge DNA, MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2013-04-23 Release date: 2014-03-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014

 

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