PDB: 113 resultsInfo pagesStatus searchChemie searchBIRD

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7WIK	Crystal structure of oligoribonuclease of Mycobacterium smegmatis mc2 155 Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Badhwar, P, Taneja, B. Deposit date: 2022-01-03 Release date: 2022-12-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Three-dimensional structure of a mycobacterial oligoribonuclease reveals a unique C-terminal tail that stabilizes the homodimer. J.Biol.Chem., 298, 2022
7YW5	Crystal Structure of the ITS1 processing by human ribonuclease ISG20L2 with mutation D327A Descriptor: Interferon-stimulated 20 kDa exonuclease-like 2 Authors: Yang, X.Y, Liu, X.H. Deposit date: 2022-08-21 Release date: 2024-01-17 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.77 Å) Cite: Molecular mechanism of human ISG20L2 for the ITS1 cleavage in the processing of 18S precursor ribosomal RNA. Nucleic Acids Res., 52, 2024
1W0H	Crystallographic structure of the nuclease domain of 3'hExo, a DEDDh family member, bound to rAMP Descriptor: 3'-5' EXONUCLEASE ERI1, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION Authors: Cheng, Y, Patel, D. Deposit date: 2004-06-04 Release date: 2004-09-30 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Crystallographic Structure of the Nuclease Domain of 3'Hexo, a Deddh Family Member, Bound to Ramp J.Mol.Biol., 343, 2004
2XRI	Crystal structure of human ERI1 exoribonuclease 3 Descriptor: ERI1 EXORIBONUCLEASE 3, GLYCEROL, MAGNESIUM ION Authors: Welin, M, Siponen, M.I, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, I, Karlberg, T, Kol, S, Kotenyova, T, Kouznetsova, E, Moche, M, Nyman, T, Persson, C, Schuler, H, Schutz, P, Thorsell, A.G, Tresaugues, L, Van Der Berg, S, Wahlberg, E, Weigelt, J, Nordlund, P. Deposit date: 2010-09-15 Release date: 2010-09-29 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal Structure of Human Eri1 Exoribonuclease 3 To be Published
1WLJ	human ISG20 Descriptor: ACETATE ION, MANGANESE (II) ION, URIDINE-5'-MONOPHOSPHATE, ... Authors: Horio, T, Murai, M, Inoue, T, Hamasaki, T, Tanaka, T, Ohgi, T. Deposit date: 2004-06-28 Release date: 2004-12-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of human ISG20, an interferon-induced antiviral ribonuclease Febs Lett., 577, 2004
6N6E	Vibrio cholerae Oligoribonuclease bound to pGA Descriptor: RNA (5'-R(P*GP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.578 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
1YTA	Crystal Structure of Oligoribonuclease, the lone essential exoribonuclease in Escherichia coli Descriptor: CITRATE ANION, Oligoribonuclease Authors: Fiedler, T.J, Zuo, Y, Malhotra, A. Deposit date: 2005-02-10 Release date: 2006-02-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure of Oligoribonuclease, the lone essential exoribonuclease in Escherichia coli To be Published
6N6A	Vibrio cholerae Oligoribonuclease bound to pGG Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*G)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.5 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6G	Vibrio cholerae Oligoribonuclease bound to pCG Descriptor: Oligoribonuclease, RNA (5'-R(P*CP*G)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.018 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
1J53	Structure of the N-terminal Exonuclease Domain of the Epsilon Subunit of E.coli DNA Polymerase III at pH 8.5 Descriptor: 1,2-ETHANEDIOL, DNA polymerase III, epsilon chain, ... Authors: Hamdan, S, Carr, P.D, Brown, S.E, Ollis, D.L, Dixon, N.E. Deposit date: 2002-01-22 Release date: 2002-10-16 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Basis for Proofreading during Replication of the Escherichia coli Chromosome Structure, 10, 2002
1J54	Structure of the N-terminal exonuclease domain of the epsilon subunit of E.coli DNA polymerase III at pH 5.8 Descriptor: 1,2-ETHANEDIOL, DNA polymerase III, epsilon chain, ... Authors: Hamdan, S, Carr, P.D, Brown, S.E, Ollis, D.L, Dixon, N.E. Deposit date: 2002-01-22 Release date: 2002-10-16 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural Basis for Proofreading during Replication of the Escherichia coli Chromosome Structure, 10, 2002
1J9A	OLIGORIBONUCLEASE Descriptor: OLIGORIBONUCLEASE, SULFATE ION Authors: Bonander, N, Tordova, M, Ladner, J.E, Eisenstein, E, Gilliland, G.L, Structure 2 Function Project (S2F) Deposit date: 2001-05-24 Release date: 2003-06-24 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The Crystal Structure of Haemophilus Influenzae HI1715, an Oligoribonuclease To be Published
7K07	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, MANGANESE (II) ION Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2020-09-03 Release date: 2021-10-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3'- 5' exoribonucleases To Be Published
7K05	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2020-09-03 Release date: 2021-10-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
7K06	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: CYTIDINE-5'-MONOPHOSPHATE, ERI1 exoribonuclease 3, MAGNESIUM ION Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2020-09-03 Release date: 2021-10-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3'- 5' exoribonucleases To Be Published
7LPY	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
7LPZ	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
7LQ0	Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3-prime - 5-prime exoribonucleases Descriptor: ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 3, GLYCEROL, ... Authors: Thapar, R, Andrew, A.S, Tainer, J.A. Deposit date: 2021-02-12 Release date: 2022-02-16 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structures and ribonuclease activity of the Flavivirus host factor ERI3 that is involved in viral RNA synthesis define the ERI subfamily of structure-specific 3' - 5' exoribonucleases To Be Published
3NH0	Crystal structure of RNase T in complex with a non-preferred ssDNA (AAC) Descriptor: 5'-D(*TP*TP*AP*CP*AP*AP*C)-3', Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NGZ	Crystal structure of RNase T in complex with a non-preferred ssDNA (GC) with one Mg in the active site Descriptor: 5'-D(P*GP*C)-3', COBALT (II) ION, MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
3NH2	Crystal structure of RNase T in complex with a stem DNA with a 3' overhang Descriptor: 5'-D(P*TP*TP*AP*CP*AP*AP*C)-3', Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011
5CY4	Crystal structure of an oligoribonuclease from Acinetobacter baumannii Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Oligoribonuclease Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2015-07-30 Release date: 2015-08-19 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Crystal structure of an oligoribonuclease from Acinetobacter baumannii To Be Published
7N8V	Crystal structure of free ERI2 nuclease Descriptor: ERI1 exoribonuclease 2, SULFATE ION Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2021-06-15 Release date: 2022-07-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of free ERI2 nuclease To Be Published
7N8W	Crystal structure of ERI2 nuclease bound to rAMP Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 2, ... Authors: Thapar, R, Arvai, A.S, Tainer, J.A. Deposit date: 2021-06-15 Release date: 2022-07-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal structure of ERI2 nuclease bound to rAMP To Be Published
3NGY	Crystal structure of RNase T (E92G mutant) Descriptor: COBALT (II) ION, Ribonuclease T, his tag sequence Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2010-06-14 Release date: 2011-02-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.204 Å) Cite: Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation Nat.Chem.Biol., 7, 2011

 

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