PDB Search results for query - Protein Data Bank Japan

PDB: 245 results Info pages Status search Chemie search BIRD

WSTF-PHD
Descriptor:	TRANSCRIPTION FACTOR WSTF, ZINC ION
Authors:	Pascual, J, Martinez-Yamout, M, Dyson, H.J, Wright, P.E.
Deposit date:	2000-06-19
Release date:	2000-12-27
Last modified:	2019-11-06
Method:	SOLUTION NMR
Cite:	Structure of the PHD zinc finger from human Williams-Beuren syndrome transcription factor. J.Mol.Biol., 304, 2000

1FP0

SOLUTION STRUCTURE OF THE PHD DOMAIN FROM THE KAP-1 COREPRESSOR
Descriptor:	KAP-1 COREPRESSOR, ZINC ION
Authors:	Capili, A.D, Schultz, D.C, Rauscher III, F.J, Borden, K.L.B.
Deposit date:	2000-08-29
Release date:	2001-01-24
Last modified:	2022-02-23
Method:	SOLUTION NMR
Cite:	Solution structure of the PHD domain from the KAP-1 corepressor: structural determinants for PHD, RING and LIM zinc-binding domains. EMBO J., 20, 2001

1MM2

Solution structure of the 2nd PHD domain from Mi2b
Descriptor:	Mi2-beta, ZINC ION
Authors:	Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P.
Deposit date:	2002-09-02
Release date:	2003-07-22
Last modified:	2022-02-23
Method:	SOLUTION NMR
Cite:	Engineering a Protein Scaffold from a PHD Finger structure, 11, 2003

1MM3

Solution structure of the 2nd PHD domain from Mi2b with C-terminal loop replaced by corresponding loop from WSTF
Descriptor:	Mi2-beta(Chromodomain helicase-DNA-binding protein 4) and transcription factor WSTF, ZINC ION
Authors:	Kwan, A.H.Y, Gell, D.A, Verger, A, Crossley, M, Matthews, J.M, Mackay, J.P.
Deposit date:	2002-09-02
Release date:	2003-07-22
Last modified:	2022-02-23
Method:	SOLUTION NMR
Cite:	Engineering a Protein Scaffold from a PHD Finger structure, 11, 2003

1WE9

Solution structure of PHD domain in nucleic acid binding protein-like NP_197993
Descriptor:	PHD finger family protein, ZINC ION
Authors:	He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2004-05-24
Release date:	2004-11-24
Last modified:	2022-03-02
Method:	SOLUTION NMR
Cite:	Solution structure of PHD domain in nucleic acid binding protein-like NP_197993 To be Published

1WEE

Solution structure of PHD domain in PHD finger family protein
Descriptor:	PHD finger family protein, ZINC ION
Authors:	He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2004-05-24
Release date:	2004-11-24
Last modified:	2022-03-02
Method:	SOLUTION NMR
Cite:	Solution structure of PHD domain in PHD finger family protein To be Published

1WEM

Solution structure of PHD domain in death inducer-obliterator 1(DIO-1)
Descriptor:	Death associated transcription factor 1, ZINC ION
Authors:	He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2004-05-25
Release date:	2004-11-25
Last modified:	2022-03-02
Method:	SOLUTION NMR
Cite:	Solution structure of PHD domain in death inducer-obliterator 1(DIO-1) To be Published

1WEP

Solution structure of PHD domain in PHF8
Descriptor:	PHF8, ZINC ION
Authors:	He, F, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2004-05-25
Release date:	2004-11-25
Last modified:	2022-03-02
Method:	SOLUTION NMR
Cite:	Solution structure of PHD domain in protein AA017385 To be Published

1WEV

Solution structure of PHD domain in protein NP_082203
Descriptor:	RIKEN cDNA 1110020M19, ZINC ION
Authors:	He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2004-05-25
Release date:	2004-11-25
Last modified:	2022-03-02
Method:	SOLUTION NMR
Cite:	Solution structure of PHD domain in protein NP_082203 To be Published

1XWH

NMR structure of the first phd finger of autoimmune regulator protein (AIRE1): insights into apeced
Descriptor:	Autoimmune regulator, ZINC ION
Authors:	Bottomley, M.J, Stier, G, Krasotkina, J, Legube, G, Simon, B, Akhtar, A, Sattler, M, Musco, G.
Deposit date:	2004-11-01
Release date:	2005-01-25
Last modified:	2022-03-02
Method:	SOLUTION NMR
Cite:	NMR structure of the first PHD finger of autoimmune regulator protein (AIRE1). Insights into autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED) disease J.Biol.Chem., 280, 2005

2DX8

Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus
Descriptor:	Pygopus homolog 1, ZINC ION
Authors:	Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-08-24
Release date:	2007-05-15
Last modified:	2024-03-13
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus To be Published

2E6R

Solution structure of the PHD domain in SmcY protein
Descriptor:	Jumonji/ARID domain-containing protein 1D, ZINC ION
Authors:	Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-12-28
Release date:	2007-07-03
Last modified:	2022-03-09
Method:	SOLUTION NMR
Cite:	Solution structure of the PHD domain in SmcY protein To be Published

2E6S

Solution structure of the PHD domain in RING finger protein 107
Descriptor:	E3 ubiquitin-protein ligase UHRF2, ZINC ION
Authors:	Kadirvel, S, He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-12-28
Release date:	2007-07-03
Last modified:	2022-03-09
Method:	SOLUTION NMR
Cite:	Solution structure of the PHD domain in RING finger protein 107 To be Published

2F6J

Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4me3 bound state
Descriptor:	ZINC ION, bromodomain PHD finger transcription factor, histone H3, ...
Authors:	Li, H, Patel, D.J.
Deposit date:	2005-11-29
Release date:	2006-07-11
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006

2F6N

Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the free form
Descriptor:	ZINC ION, bromodomain PHD finger transcription factor
Authors:	Li, H, Patel, D.J.
Deposit date:	2005-11-29
Release date:	2006-07-11
Last modified:	2017-10-18
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006

2FSA

Crystal structure of PHD finger-linker-bromodomain fragment of human BPTF in the H3(1-15)K4ME2 bound state
Descriptor:	Histone H3(1-15)K4me2 peptide, ZINC ION, bromodomain PHD finger transcription factor
Authors:	Li, H, Patel, D.J.
Deposit date:	2006-01-21
Release date:	2006-07-11
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006

2FUI

NMR solution structure of PHD finger fragment of human BPTF in free state
Descriptor:	bromodomain PHD finger transcription factor
Authors:	Ilin, S, Patel, D.J.
Deposit date:	2006-01-26
Release date:	2006-07-11
Last modified:	2022-03-09
Method:	SOLUTION NMR
Cite:	Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006

2FUU

NMR solution structure of the PHD domain from the human BPTF in complex with H3(1-15)K4me3 peptide
Descriptor:	Histone H3, ZINC ION, bromodomain PHD finger transcription factor
Authors:	Ilin, S, Patel, D.J.
Deposit date:	2006-01-27
Release date:	2006-07-11
Last modified:	2022-03-09
Method:	SOLUTION NMR
Cite:	Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature, 442, 2006

2K16

Solution structure of the free TAF3 PHD domain
Descriptor:	Transcription initiation factor TFIID subunit 3, ZINC ION
Authors:	van Ingen, H, van Schaik, F.M.A, Wienk, H, Timmers, M, Boelens, R.
Deposit date:	2008-02-22
Release date:	2008-07-15
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Recognition of the H3K4me3 mark by the TAF3-PHD finger To be Published

2K17

Solution structure of the TAF3 PHD domain in complex with a H3K4me3 peptide
Descriptor:	H3K4me3 peptide, Transcription initiation factor TFIID subunit 3, ZINC ION
Authors:	van Ingen, H, van Schaik, F.M.A, Wienk, H, Timmers, M, Boelens, R.
Deposit date:	2008-02-22
Release date:	2008-07-15
Last modified:	2023-06-14
Method:	SOLUTION NMR
Cite:	Recognition of the H3K4me3 mark by the TAF3-PHD finger To be Published

2KE1

Molecular Basis of non-modified histone H3 tail Recognition by the First PHD Finger of Autoimmune Regulator
Descriptor:	Autoimmune regulator, H3K4me0, ZINC ION
Authors:	Chignola, F, Gaetani, M, Rebane, A, Org, T, Mollica, L, Zucchelli, C, Spitaleri, A, Mannella, V, Peterson, P, Musco, G.
Deposit date:	2009-01-22
Release date:	2009-05-26
Last modified:	2022-03-16
Method:	SOLUTION NMR
Cite:	The solution structure of the first PHD finger of autoimmune regulator in complex with non-modified histone H3 tail reveals the antagonistic role of H3R2 methylation Nucleic Acids Res., 37, 2009

2KFT

NMR Solution structure of the first PHD finger domain of human Autoimmune Regulator (AIRE) in complex with Histone H3(1-20Cys) Peptide
Descriptor:	Autoimmune regulator, Histone H3, ZINC ION
Authors:	Chakravarty, S, Zeng, L, Zhou, M.
Deposit date:	2009-02-27
Release date:	2009-04-28
Last modified:	2022-03-16
Method:	SOLUTION NMR
Cite:	Structure and Site-Specific Recognition of Histone H3 by the PHD Finger of Human Autoimmune Regulator. Structure, 17, 2009

2KU7

Solution structure of MLL1 PHD3-Cyp33 RRM chimeric protein
Descriptor:	MLL1 PHD3-Cyp33 RRM chimeric protein
Authors:	Song, J, Wang, Z, Patel, D.
Deposit date:	2010-02-12
Release date:	2010-07-07
Last modified:	2022-03-16
Method:	SOLUTION NMR
Cite:	Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression. Cell(Cambridge,Mass.), 141, 2010

2KWJ

Solution structures of the double PHD fingers of human transcriptional protein DPF3 bound to a histone peptide containing acetylation at lysine 14
Descriptor:	Histone peptide, ZINC ION, Zinc finger protein DPF3
Authors:	Zeng, L, Zhang, Q, Li, S, Plotnikov, A.N, Walsh, M.J, Zhou, M.
Deposit date:	2010-04-12
Release date:	2010-07-14
Last modified:	2023-11-15
Method:	SOLUTION NMR
Cite:	Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b. Nature, 466, 2010

2KWK

Solution structures of the double PHD fingers of human transcriptional protein DPF3b bound to a H3 peptide wild type
Descriptor:	Histone peptide, ZINC ION, Zinc finger protein DPF3
Authors:	Zeng, L, Zhang, Q, Li, S, Plotnikov, A.N, Walsh, M.J, Zhou, M.
Deposit date:	2010-04-12
Release date:	2010-07-14
Last modified:	2013-06-19
Method:	SOLUTION NMR
Cite:	Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b. Nature, 466, 2010

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Total results:	245
Displayed results:	25
Sorted by:	PDBID ascending
Query:	PF00628