PDB: 449 resultsInfo pagesStatus searchChemie searchBIRD

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1GO3	Structure of an archeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex Descriptor: DNA-DIRECTED RNA POLYMERASE SUBUNIT E, DNA-DIRECTED RNA POLYMERASE SUBUNIT F Authors: Todone, F, Brick, P, Werner, F, Weinzierl, R.O.J, Onesti, S. Deposit date: 2001-10-17 Release date: 2001-12-07 Last modified: 2018-03-28 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structure of an Archaeal Homolog of the Eukaryotic RNA Polymerase II Rpb4/Rpb7 Complex Mol.Cell, 8, 2001
1SMX	Crystal structure of the S1 domain of RNase E from E. coli (native) Descriptor: Ribonuclease E Authors: Schubert, M, Edge, R.E, Lario, P, Cook, M.A, Strynadka, N.C.J, Mackie, G.A, McIntosh, L.P. Deposit date: 2004-03-09 Release date: 2004-08-17 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces. J.Mol.Biol., 341, 2004
1LUZ	Crystal Structure of the K3L Protein From Vaccinia Virus (Wisconsin Strain) Descriptor: Protein K3 Authors: Dar, A.C, Sicheri, F. Deposit date: 2002-05-23 Release date: 2002-08-28 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: X-ray crystal structure and functional analysis of vaccinia virus K3L reveals molecular determinants for PKR subversion and substrate recognition. Mol.Cell, 10, 2002
7DID	Mycoplasma genitalium RNase R in complex with ribose methylated single-stranded RNA Descriptor: MAGNESIUM ION, RNA (5'-R(*AP*AP*AP*A)-3'), Ribonuclease R Authors: Abula, A, Quan, X, Li, X, Yang, T, Li, T, Chen, Q, Ji, X. Deposit date: 2020-11-18 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Molecular mechanism of RNase R substrate sensitivity for RNA ribose methylation. Nucleic Acids Res., 49, 2021
1KL9	Crystal structure of the N-terminal segment of Human eukaryotic initiation factor 2alpha Descriptor: EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1, ZINC ION Authors: Nonato, M.C, Widom, J, Clardy, J. Deposit date: 2001-12-11 Release date: 2002-03-11 Last modified: 2018-01-31 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of the N-terminal segment of human eukaryotic translation initiation factor 2alpha J.Biol.Chem., 277, 2002
7DCY	Apo form of Mycoplasma genitalium RNase R Descriptor: MAGNESIUM ION, Ribonuclease R Authors: Abula, A, Quan, X, Li, X, Yang, T, Li, T, Chen, Q, Ji, X. Deposit date: 2020-10-27 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.972 Å) Cite: Molecular mechanism of RNase R substrate sensitivity for RNA ribose methylation. Nucleic Acids Res., 49, 2021
1SN8	Crystal structure of the S1 domain of RNase E from E. coli (Pb derivative) Descriptor: LEAD (II) ION, Ribonuclease E Authors: Schubert, M, Edge, R.E, Lario, P, Cook, M.A, Strynadka, N.C.J, Mackie, G.A, McIntosh, L.P. Deposit date: 2004-03-10 Release date: 2004-08-17 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces. J.Mol.Biol., 341, 2004
7DOL	Mycoplasma genitalium RNase R in complex with double-stranded RNA Descriptor: MAGNESIUM ION, RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3'), Ribonuclease R Authors: Abula, A, Quan, X, Li, X, Yang, T, Li, T, Chen, Q, Ji, X. Deposit date: 2020-12-14 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.002 Å) Cite: Molecular mechanism of RNase R substrate sensitivity for RNA ribose methylation. Nucleic Acids Res., 49, 2021
4NNG	Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide Descriptor: 30S ribosomal protein S1 Authors: Yang, J, Liu, Y, Cai, Q, Lin, D. Deposit date: 2013-11-18 Release date: 2014-12-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide. Mol.Microbiol., 95, 2015
1HH2	Crystal structure of NusA from Thermotoga maritima Descriptor: N UTILIZATION SUBSTANCE PROTEIN A Authors: Worbs, M, Bourenkov, G.P, Bartunik, H.D, Huber, R, Wahl, M.C. Deposit date: 2000-12-18 Release date: 2001-10-19 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: An Extended RNA Binding Surface Through Arrayed S1 and Kh Domains in Transcription Factor Nusa Mol.Cell, 7, 2001
5LM9	Structure of E. coli NusA Descriptor: MAGNESIUM ION, SULFATE ION, Transcription termination/antitermination protein NusA Authors: Said, N, Weber, G, Santos, K, Wahl, M.C. Deposit date: 2016-07-29 Release date: 2017-04-05 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.143 Å) Cite: Structural basis for lambda N-dependent processive transcription antitermination. Nat Microbiol, 2, 2017
5YJJ	Crystal structure of PNPase from Staphylococcus epidermidis Descriptor: MAGNESIUM ION, PHOSPHATE ION, Polyribonucleotide nucleotidyltransferase Authors: Raj, R, Gopal, B. Deposit date: 2017-10-10 Release date: 2018-01-31 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Characterization of Staphylococcus epidermidis Polynucleotide phosphorylase and its interactions with ribonucleases RNase J1 and RNase J2. Biochem. Biophys. Res. Commun., 495, 2018
7DIC	Mycoplasma genitalium RNase R in complex with single-stranded RNA Descriptor: MAGNESIUM ION, RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Ribonuclease R Authors: Abula, A, Quan, X, Li, X, Yang, T, Li, T, Chen, Q, Ji, X. Deposit date: 2020-11-18 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.242 Å) Cite: Molecular mechanism of RNase R substrate sensitivity for RNA ribose methylation. Nucleic Acids Res., 49, 2021
3BZC	Crystal Structure of the Tex protein from Pseudomonas aeruginosa, crystal form I Descriptor: Tex Authors: Johnson, S.J, Close, D, Hill, C.P. Deposit date: 2008-01-17 Release date: 2008-04-08 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Crystal structure and RNA binding of the Tex protein from Pseudomonas aeruginosa. J.Mol.Biol., 377, 2008
3BZK	Crystal Structure of the Tex protein from Pseudomonas aeruginosa, crystal form 2 Descriptor: Tex Authors: Johnson, S.J, Close, D, Hill, C.P. Deposit date: 2008-01-18 Release date: 2008-04-08 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure and RNA binding of the Tex protein from Pseudomonas aeruginosa. J.Mol.Biol., 377, 2008
4NNH	Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide Descriptor: 30S ribosomal protein S1 Authors: Yang, J, Liu, Y, Cai, Q, Lin, D. Deposit date: 2013-11-18 Release date: 2014-12-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide. Mol.Microbiol., 95, 2015
1Y14	Crystal structure of yeast subcomplex of Rpb4 and Rpb7 Descriptor: DNA-directed RNA polymerase II 19 kDa polypeptide, DNA-directed RNA polymerase II 32 kDa polypeptide Authors: Armache, K.-J, Mitterweger, S, Meinhart, A, Cramer, P. Deposit date: 2004-11-17 Release date: 2004-12-14 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structures of Complete RNA Polymerase II and Its Subcomplex, Rpb4/7 J.Biol.Chem., 280, 2005
4NNK	Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide Descriptor: 30S ribosomal protein S1 Authors: Yang, J, Liu, Y, Cai, Q, Lin, D. Deposit date: 2013-11-18 Release date: 2014-12-24 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.31 Å) Cite: Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide. Mol.Microbiol., 95, 2015
4QJF	X-ray crystal structure of Thermocuccus kodakarensis RNA polymerase Rpp4/Rpo7 (RpoF/RpoE) complex Descriptor: DNA-directed RNA polymerase, subunit E', subunit F Authors: Murakami, K.S. Deposit date: 2014-06-03 Release date: 2014-10-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.312 Å) Cite: Crystal structure of euryarchaeal RNA polymerase and insight into the evolution of RNA polymerase II structure Nat.Commun., 2014
2ID0	Escherichia coli RNase II Descriptor: Exoribonuclease 2, MANGANESE (II) ION Authors: Zuo, Y, Zhang, J, Wang, Y, Malhotra, A. Deposit date: 2006-09-13 Release date: 2006-10-03 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural Basis for Processivity and Single-Strand Specificity of RNase II. Mol.Cell, 24, 2006
2IX0	RNase II Descriptor: CALCIUM ION, CYTIDINE-5'-MONOPHOSPHATE, EXORIBONUCLEASE 2, ... Authors: Frazao, C, Mcvey, C.E, Amblar, M, Barbas, A, Vonrhein, C, Arraiano, C.M, Carrondo, M.A. Deposit date: 2006-07-05 Release date: 2006-10-05 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.44 Å) Cite: Unravelling the Dynamics of RNA Degradation by Ribonuclease II and its RNA-Bound Complex Nature, 7, 2006
8QEL	PKR kinase domain- eIF2alpha in complex with compound Descriptor: (3~{Z})-3-[(4-methyl-1~{H}-imidazol-5-yl)methylidene]-2-oxidanylidene-1~{H}-indole-5-carboxamide, Eukaryotic translation initiation factor 2 subunit alpha, Interferon-induced, ... Authors: Nawrotek, A, Vuillard, L, Miallau, L. Deposit date: 2023-08-31 Release date: 2023-09-13 Method: X-RAY DIFFRACTION (2.451 Å) Cite: PKR kinase domain- eIF2alpha in complex with compound To Be Published
6D6K	Structure of polyribonucleotide nucleotidyltransferase from Acinetobacter baumannii Descriptor: Polyribonucleotide nucleotidyltransferase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-04-21 Release date: 2018-05-02 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of polyribonucleotide nucleotidyltransferase from Acinetobacter baumannii to be published
2A19	PKR kinase domain- eIF2alpha- AMP-PNP complex. Descriptor: Eukaryotic translation initiation factor 2 alpha subunit, Interferon-induced, double-stranded RNA-activated protein kinase, ... Authors: Dar, A.C, Dever, T.E, Sicheri, F. Deposit date: 2005-06-19 Release date: 2005-09-27 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Higher-Order Substrate Recognition of eIF2alpha by the RNA-Dependent Protein Kinase PKR. Cell(Cambridge,Mass.), 122, 2005
1E3P	tungstate derivative of Streptomyces antibioticus PNPase/GPSI enzyme Descriptor: Polyribonucleotide nucleotidyltransferase, SULFATE ION, TUNGSTATE(VI)ION Authors: Symmons, M.F, Jones, G.H, Luisi, B.F. Deposit date: 2000-06-20 Release date: 2000-11-03 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A Duplicated Fold is the Structural Basis for Polynucleotide Phosphorylase Catalytic Activity, Processivity, and Regulation Structure, 8, 2000

 

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