Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8W6X
DownloadVisualize
BU of 8w6x by Molmil
Neutron structure of [NiFe]-hydrogenase from D. vulgaris Miyazaki F in its oxidized state
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, FE3-S4 CLUSTER, ...
Authors:Hiromoto, T, Tamada, T.
Deposit date:2023-08-30
Release date:2023-09-13
Last modified:2023-11-15
Method:NEUTRON DIFFRACTION (1.04 Å), X-RAY DIFFRACTION
Cite:New insights into the oxidation process from neutron and X-ray crystal structures of an O 2 -sensitive [NiFe]-hydrogenase.
Chem Sci, 14, 2023
8POV
DownloadVisualize
BU of 8pov by Molmil
Crystal Structure of the C19G/C120G variant of the membrane-bound [NiFe]-Hydrogenase from Cupriavidus necator in the H2-reduced state at 1.92 A Resolution.
Descriptor: FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
Authors:Schmidt, A, Kalms, J, Scheerer, P.
Deposit date:2023-07-05
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Stepwise conversion of the Cys 6 [4Fe-3S] to a Cys 4 [4Fe-4S] cluster and its impact on the oxygen tolerance of [NiFe]-hydrogenase.
Chem Sci, 14, 2023
8POU
DownloadVisualize
BU of 8pou by Molmil
Crystal Structure of the C19G/C120G variant of the membrane-bound [NiFe]-Hydrogenase from Cupriavidus necator in the air-oxidized state at 1.65 A Resolution.
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Schmidt, A, Kalms, J, Scheerer, P.
Deposit date:2023-07-05
Release date:2023-11-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Stepwise conversion of the Cys 6 [4Fe-3S] to a Cys 4 [4Fe-4S] cluster and its impact on the oxygen tolerance of [NiFe]-hydrogenase.
Chem Sci, 14, 2023
8POW
DownloadVisualize
BU of 8pow by Molmil
Crystal Structure of the C19G variant of the membrane-bound [NiFe]-Hydrogenase from Cupriavidus necator in the air-oxidized state at 1.61 A Resolution.
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, Fe4S4, ...
Authors:Kalms, J, Schmidt, A, Scheerer, P.
Deposit date:2023-07-05
Release date:2023-11-15
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Stepwise conversion of the Cys 6 [4Fe-3S] to a Cys 4 [4Fe-4S] cluster and its impact on the oxygen tolerance of [NiFe]-hydrogenase.
Chem Sci, 14, 2023
8DQV
DownloadVisualize
BU of 8dqv by Molmil
The 1.52 angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L)
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2, ...
Authors:Grinter, R, Venugopal, H, Kropp, A, Greening, C.
Deposit date:2022-07-20
Release date:2023-01-04
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (1.52 Å)
Cite:Structural basis for bacterial energy extraction from atmospheric hydrogen.
Nature, 615, 2023
7UUR
DownloadVisualize
BU of 7uur by Molmil
The 1.67 Angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L)
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, HYDROXIDE ION, ...
Authors:Grinter, R, Venugopal, H, Kropp, A, Greening, C.
Deposit date:2022-04-28
Release date:2023-01-04
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (1.67 Å)
Cite:Structural basis for bacterial energy extraction from atmospheric hydrogen.
Nature, 615, 2023
7UUS
DownloadVisualize
BU of 7uus by Molmil
The CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - Full complex focused refinement of stalk
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2, ...
Authors:Grinter, R, Venugopal, H, Kropp, A, Greening, C.
Deposit date:2022-04-28
Release date:2023-01-04
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (8 Å)
Cite:Structural basis for bacterial energy extraction from atmospheric hydrogen.
Nature, 615, 2023
7UTD
DownloadVisualize
BU of 7utd by Molmil
The 2.19-angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - Complex minus stalk
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2, ...
Authors:Grinter, R, Venugopal, H, Kropp, A, Greening, C.
Deposit date:2022-04-26
Release date:2023-01-04
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (2.19 Å)
Cite:Structural basis for bacterial energy extraction from atmospheric hydrogen.
Nature, 615, 2023
7Z0T
DownloadVisualize
BU of 7z0t by Molmil
Structure of the Escherichia coli formate hydrogenlyase complex (aerobic preparation, composite structure)
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CARBONMONOXIDE-(DICYANO) IRON, FE (III) ION, ...
Authors:Steinhilper, R, Murphy, B.J.
Deposit date:2022-02-23
Release date:2022-09-28
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli.
Nat Commun, 13, 2022
7Z0S
DownloadVisualize
BU of 7z0s by Molmil
Structure of the Escherichia coli formate hydrogenlyase complex (anaerobic preparation, without formate dehydrogenase H)
Descriptor: 1-CIS-9-OCTADECANOYL-2-CIS-9-HEXADECANOYL PHOSPHATIDYL GLYCEROL, CARBONMONOXIDE-(DICYANO) IRON, CARDIOLIPIN, ...
Authors:Steinhilper, R, Murphy, B.J.
Deposit date:2022-02-23
Release date:2022-09-28
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli.
Nat Commun, 13, 2022
7T2R
DownloadVisualize
BU of 7t2r by Molmil
Structure of electron bifurcating Ni-Fe hydrogenase complex HydABCSL in FMN-free apo state
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Feng, X, Li, H.
Deposit date:2021-12-06
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure and electron transfer pathways of an electron-bifurcating NiFe-hydrogenase.
Sci Adv, 8, 2022
7T30
DownloadVisualize
BU of 7t30 by Molmil
Structure of electron bifurcating Ni-Fe hydrogenase complex HydABCSL in FMN/NAD(H) bound state
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Feng, X, Li, H.
Deposit date:2021-12-06
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure and electron transfer pathways of an electron-bifurcating NiFe-hydrogenase.
Sci Adv, 8, 2022
7VXQ
DownloadVisualize
BU of 7vxq by Molmil
The Carbon Monoxide Complex of [NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77
Descriptor: CARBON MONOXIDE, FE3-S4 CLUSTER, GLYCEROL, ...
Authors:Nishikawa, K, Higuchi, K, Imanishi, T, Higuchi, Y.
Deposit date:2021-11-13
Release date:2022-02-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and spectroscopic characterization of CO inhibition of [NiFe]-hydrogenase from Citrobacter sp. S-77.
Acta Crystallogr.,Sect.F, 78, 2022
7ODH
DownloadVisualize
BU of 7odh by Molmil
Crystal structure of the O2-tolerant MBH-P242C from Ralstonia eutropha in its as-isolated state
Descriptor: CHLORIDE ION, FE4-S3 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Schmidt, A, Kalms, J, Scheerer, P.
Deposit date:2021-04-29
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Resonance Raman spectroscopic analysis of the iron-sulfur cluster redox chain of the Ralstonia eutropha membrane-bound [NiFe]-hydrogenase
J Raman Spectrosc, 2021
7ODG
DownloadVisualize
BU of 7odg by Molmil
Crystal structure of the O2-tolerant MBH-P242C from Ralstonia eutropha in its reduced state
Descriptor: CHLORIDE ION, FE4-S3 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Schmidt, A, Kalms, J, Scheerer, P.
Deposit date:2021-04-29
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Resonance Raman spectroscopic analysis of the iron-sulfur cluster redox chain of the Ralstonia eutropha membrane-bound [NiFe]-hydrogenase
J Raman Spectrosc, 2021
7NEM
DownloadVisualize
BU of 7nem by Molmil
Hydrogenase-2 variant R479K - anaerobically oxidised form
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ...
Authors:Carr, S.B.
Deposit date:2021-02-04
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A comprehensive structural and kinetic investigation of the role of the active-site argininein bidirectional hydrogen activation by the [NiFe]-hydrogenase "Hyd-2) from Escherichia coli
To Be Published
6ZA1
DownloadVisualize
BU of 6za1 by Molmil
Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2-hd
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, GLYCEROL, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-04
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
6Z9O
DownloadVisualize
BU of 6z9o by Molmil
Structure of [NiFeSe] hydrogenase G491S variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2-ld
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, GLYCEROL, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-04
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
6Z9G
DownloadVisualize
BU of 6z9g by Molmil
Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-03
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
6Z8M
DownloadVisualize
BU of 6z8m by Molmil
Structure of [NiFeSe] hydrogenase G491S variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491S-O2
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-02
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
6Z8J
DownloadVisualize
BU of 6z8j by Molmil
Structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris hildenborough pressurized with Oxygen gas - structure wtO2
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-02
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
6Z8O
DownloadVisualize
BU of 6z8o by Molmil
Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Krypton gas - structure G491A-Kr
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-02
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
6Z7R
DownloadVisualize
BU of 6z7r by Molmil
Structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris hildenborough pressurized with Krypton gas - structure wtKr1
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ...
Authors:Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M.
Deposit date:2020-06-01
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen.
J.Biol.Inorg.Chem., 25, 2020
6SZK
DownloadVisualize
BU of 6szk by Molmil
Hydrogenase-2 variant R479K - hydrogen reduced form treated with CO
Descriptor: CARBON MONOXIDE, CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, ...
Authors:Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A.
Deposit date:2019-10-02
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Hydrogen activation by NiFe-hydrogenases - consolidating the role of the pendant arginine.
To Be Published
6SZD
DownloadVisualize
BU of 6szd by Molmil
Hydrogenase-2 variant R479K - hydrogen reduced form
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ...
Authors:Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A.
Deposit date:2019-10-02
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Hydrogen activation by NiFe-hydrogenases - consolidating the role of the pendant arginine.
To Be Published

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon