Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YK4
DownloadVisualize
BU of 6yk4 by Molmil
Structure of the AMPA receptor GluA2o ligand-binding domain (S1S2J) in complex with the compound ( S) - 1- [2'-Amino-2'-carboxyethyl]-6-methyl-5 ,7- dihydropyrrolo[3,4-d]pyrimidin-2,4(1H,3H)-dione at resolution 1.00A
Descriptor: (2~{S})-2-azanyl-3-[6-methyl-2,4-bis(oxidanylidene)-5,7-dihydropyrrolo[3,4-d]pyrimidin-1-yl]propanoic acid, CHLORIDE ION, GLYCEROL, ...
Authors:Frydenvang, K, Kastrup, J.S.
Deposit date:2020-04-05
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (0.999 Å)
Cite:Ionotropic Glutamate Receptor GluA2 in Complex with Bicyclic Pyrimidinedione-Based Compounds: When Small Compound Modifications Have Distinct Effects on Binding Interactions.
Acs Chem Neurosci, 11, 2020
6YK5
DownloadVisualize
BU of 6yk5 by Molmil
Structure of the AMPA receptor GluA2o ligand-binding domain (S1S2J) in complex with the compound (S)-1-(2'-Amino-2'-carboxyethyl)-5,7-dihydrofuro[3,4-d]- pyrimidine-2,4(1H,3H)-dione at resolution 1.15A
Descriptor: (S)-1-(2'-Amino-2'-carboxyethyl)-5,7-dihydrofuro[3,4-d]-pyrimidine-2,4(1H,3H)-dione, CHLORIDE ION, GLYCEROL, ...
Authors:Frydenvang, K, Kastrup, J.S.
Deposit date:2020-04-05
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Ionotropic Glutamate Receptor GluA2 in Complex with Bicyclic Pyrimidinedione-Based Compounds: When Small Compound Modifications Have Distinct Effects on Binding Interactions.
Acs Chem Neurosci, 11, 2020
5NG9
DownloadVisualize
BU of 5ng9 by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with agonist CIP-AS at 1.15 A resolution.
Descriptor: (2~{S},3~{R},4~{R})-3-(carboxycarbonyl)-4-oxidanyl-pyrrolidine-2-carboxylic acid, (3~{a}~{S},4~{S},6~{a}~{R})-4,5,6,6~{a}-tetrahydro-3~{a}~{H}-pyrrolo[3,4-d][1,2]oxazole-3,4-dicarboxylic acid, CITRATE ANION, ...
Authors:Laulumaa, S, Frydenvang, K.A, Winther, S, Kastrup, J.S.
Deposit date:2017-03-17
Release date:2017-07-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structure and Affinity of Two Bicyclic Glutamate Analogues at AMPA and Kainate Receptors.
ACS Chem Neurosci, 8, 2017
6YK3
DownloadVisualize
BU of 6yk3 by Molmil
Structure of the AMPA receptor GluA2o ligand-binding domain (S1S2J) in complex with the compound ( S) - 1- [2'-Amino-2'-carboxyethyl]-5 ,7- dihydropyrrolo[3,4-d]pyrimidin-2,4(1H,3H)-dione at resolution 1.20A
Descriptor: (S)-1-[2'-Amino-2'-carboxyethyl]-5,7-dihydropyrrolo[3,4-d]pyrimidin-2,4(1H,3H)-dione, AMMONIUM ION, CHLORIDE ION, ...
Authors:Frydenvang, K, Kastrup, J.S.
Deposit date:2020-04-05
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Ionotropic Glutamate Receptor GluA2 in Complex with Bicyclic Pyrimidinedione-Based Compounds: When Small Compound Modifications Have Distinct Effects on Binding Interactions.
Acs Chem Neurosci, 11, 2020
5JEI
DownloadVisualize
BU of 5jei by Molmil
Crystal structure of the GluA2 LBD in complex with FW
Descriptor: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, 2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID, ...
Authors:Eibl, C, Salazar, H, Chebli, M, Plested, A.J.R.
Deposit date:2016-04-18
Release date:2017-02-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.229 Å)
Cite:Mechanism of partial agonism in AMPA-type glutamate receptors.
Nat Commun, 8, 2017
4IGT
DownloadVisualize
BU of 4igt by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with the agonist ZA302 at 1.24A resolution
Descriptor: (4R)-4-{3-[hydroxy(methyl)amino]-3-oxopropyl}-L-glutamic acid, GLYCEROL, Glutamate receptor 2, ...
Authors:Larsen, A.P, Venskutonyte, R, Gajhede, M, Kastrup, J.S, Frydenvang, K.
Deposit date:2012-12-18
Release date:2013-03-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Chemoenzymatic synthesis of new 2,4-syn-functionalized (S)-glutamate analogues and structure-activity relationship studies at ionotropic glutamate receptors and excitatory amino acid transporters.
J.Med.Chem., 56, 2013
3G3K
DownloadVisualize
BU of 3g3k by Molmil
Crystal structure of the GluR6 ligand binding domain dimer I442H K494E K665R I749L Q753K E757Q mutant with glutamate and NaCl at 1.24 Angstrom resolution
Descriptor: CHLORIDE ION, GLUTAMIC ACID, Glutamate receptor, ...
Authors:Chaudhry, C, Mayer, M.L.
Deposit date:2009-02-02
Release date:2009-06-02
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Stability of ligand-binding domain dimer assembly controls kainate receptor desensitization.
Embo J., 28, 2009
5ZG2
DownloadVisualize
BU of 5zg2 by Molmil
Crystal structure of the GluA2o LBD in complex with ZK200775 and Compound-2
Descriptor: 9-(4-~{tert}-butylphenyl)-3,4-dihydropyrido[2,1-c][1,2,4]thiadiazine 2,2-dioxide, ACETATE ION, GLYCEROL, ...
Authors:Sogabe, S, Igaki, S, Hirokawa, A, Zama, Y, Lane, W, Snell, G.
Deposit date:2018-03-07
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:TAK-137, an AMPA-R potentiator with little agonistic effect, has a wide therapeutic window.
Neuropsychopharmacology, 44, 2019
4YU0
DownloadVisualize
BU of 4yu0 by Molmil
Crystal structure of a tetramer of GluA2 TR mutant ligand binding domains bound with glutamate at 1.26 Angstrom resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLUTAMIC ACID, Glutamate receptor 2,Glutamate receptor 2, ...
Authors:Chebli, M, Salazar, H, Baranovic, J, Carbone, A.L, Ghisi, V, Faelber, K, Lau, A.Y, Daumke, O, Plested, A.J.R.
Deposit date:2015-03-18
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Crystal structure of the tetrameric GluA2 ligand-binding domain in complex with glutamate at 1.26 Angstroms resolution
To Be Published
5CMM
DownloadVisualize
BU of 5cmm by Molmil
Crystal structure of the GluK2EM LBD dimer assembly complex with 2S,4R-4-methylglutamate
Descriptor: 2S,4R-4-METHYLGLUTAMATE, Glutamate receptor ionotropic, kainate 2
Authors:Chittori, S, Mayer, M.L.
Deposit date:2015-07-16
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.271 Å)
Cite:Structural basis of kainate subtype glutamate receptor desensitization.
Nature, 537, 2016
5EHM
DownloadVisualize
BU of 5ehm by Molmil
Crystal structure of the Drosophila CG3822 KaiR1D ligand binding domain complex with NMDA
Descriptor: N-methyl-D-aspartic acid, RE06730p,CG3822
Authors:Dharkar, P, Mayer, M.L.
Deposit date:2015-10-28
Release date:2016-11-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.281 Å)
Cite:Novel Functional Properties of Drosophila CNS Glutamate Receptors.
Neuron, 92, 2016
5NIH
DownloadVisualize
BU of 5nih by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with agonist LM-12b at 1.3 A resolution.
Descriptor: (3~{a}~{R},4~{S},6~{a}~{R})-1-methyl-4,5,6,6~{a}-tetrahydro-3~{a}~{H}-pyrrolo[3,4-c]pyrazole-3,4-dicarboxylic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Laulumaa, S, Frydenvang, K.A, Kastrup, J.S.
Deposit date:2017-03-24
Release date:2017-07-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure and Affinity of Two Bicyclic Glutamate Analogues at AMPA and Kainate Receptors.
ACS Chem Neurosci, 8, 2017
3G3G
DownloadVisualize
BU of 3g3g by Molmil
Crystal structure of the GluR6 ligand binding domain dimer K665R mutant with glutamate and NaCl at 1.3 Angstrom resolution
Descriptor: CHLORIDE ION, GLUTAMIC ACID, Glutamate receptor, ...
Authors:Chaudhry, C, Mayer, M.L.
Deposit date:2009-02-02
Release date:2009-06-02
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.303 Å)
Cite:Stability of ligand-binding domain dimer assembly controls kainate receptor desensitization.
Embo J., 28, 2009
5ZG1
DownloadVisualize
BU of 5zg1 by Molmil
Crystal structure of the GluA2o LBD in complex with glutamate and Compound-2
Descriptor: 9-(4-~{tert}-butylphenyl)-3,4-dihydropyrido[2,1-c][1,2,4]thiadiazine 2,2-dioxide, GLUTAMIC ACID, GLYCEROL, ...
Authors:Sogabe, S, Igaki, S, Hirokawa, A, Zama, Y, Lane, W, Snell, G.
Deposit date:2018-03-07
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:TAK-137, an AMPA-R potentiator with little agonistic effect, has a wide therapeutic window.
Neuropsychopharmacology, 44, 2019
3G3J
DownloadVisualize
BU of 3g3j by Molmil
Crystal structure of the GluR6 ligand binding domain dimer I442H K494E K665R I749L Q753K mutant with glutamate and NaCl at 1.32 Angstrom resolution
Descriptor: CHLORIDE ION, GLUTAMIC ACID, Glutamate receptor, ...
Authors:Chaudhry, C, Mayer, M.L.
Deposit date:2009-02-02
Release date:2009-06-02
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.321 Å)
Cite:Stability of ligand-binding domain dimer assembly controls kainate receptor desensitization.
Embo J., 28, 2009
1PB7
DownloadVisualize
BU of 1pb7 by Molmil
CRYSTAL STRUCTURE OF THE NR1 LIGAND BINDING CORE IN COMPLEX WITH GLYCINE AT 1.35 ANGSTROMS RESOLUTION
Descriptor: GLYCINE, N-methyl-D-aspartate Receptor Subunit 1
Authors:Furukawa, H, Gouaux, E.
Deposit date:2003-05-14
Release date:2003-06-24
Last modified:2017-07-26
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Mechanisms of activation, inhibition and specificity: crystal structures of the NMDA receptor NR1 ligand-binding core
Embo J., 22, 2003
5FTI
DownloadVisualize
BU of 5fti by Molmil
Crystal structure of the GluA2 K738M-T744K LBD in complex with glutamate (lithium form)
Descriptor: GLUTAMATE RECEPTOR 2, GLUTAMIC ACID, GLYCEROL, ...
Authors:Nayeem, N, Green, T.
Deposit date:2016-01-13
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Distinct Structural Pathways Coordinate the Activation of Ampa Receptor-Auxiliary Subunit Complexes.
Neuron, 89, 2016
1MQI
DownloadVisualize
BU of 1mqi by Molmil
Crystal Structure of the GluR2 Ligand Binding Core (S1S2J) in Complex with Fluoro-Willardiine at 1.35 Angstroms Resolution
Descriptor: 2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID, glutamate receptor 2
Authors:Jin, R, Banke, T.G, Mayer, M.L, Traynelis, S.F, Gouaux, E.
Deposit date:2002-09-16
Release date:2003-08-05
Last modified:2017-08-02
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis for partial agonist action at ionotropic glutamate receptors
Nat.Neurosci., 6, 2003
3GBA
DownloadVisualize
BU of 3gba by Molmil
X-ray structure of iGluR5 ligand-binding core (S1S2) in complex with dysiherbaine at 1.35A resolution
Descriptor: (2R,3aR,6S,7R,7aR)-2-[(2S)-2-amino-2-carboxyethyl]-6-hydroxy-7-(methylamino)hexahydro-2H-furo[3,2-b]pyran-2-carboxylic acid, CHLORIDE ION, GLYCEROL, ...
Authors:Frydenvang, K, Naur, P, Gajhede, M, Kastrup, J.S.
Deposit date:2009-02-19
Release date:2009-03-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Full Domain Closure of the Ligand-binding Core of the Ionotropic Glutamate Receptor iGluR5 Induced by the High Affinity Agonist Dysiherbaine and the Functional Antagonist 8,9-Dideoxyneodysiherbaine
J.Biol.Chem., 284, 2009
4IO2
DownloadVisualize
BU of 4io2 by Molmil
Crystal Structure of the AvGluR1 ligand binding domain complex with glutamate at 1.37 Angstrom resolution
Descriptor: CHLORIDE ION, GLUTAMIC ACID, Glutamate receptor 1
Authors:Lomash, S, Chittori, S, Mayer, M.L.
Deposit date:2013-01-07
Release date:2013-02-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Anions Mediate Ligand Binding in Adineta vaga Glutamate Receptor Ion Channels.
Structure, 21, 2013
3G3I
DownloadVisualize
BU of 3g3i by Molmil
Crystal structure of the GluR6 ligand binding domain dimer I442H K494E I749L Q753K mutant with glutamate and NaCl at 1.37 Angstrom resolution
Descriptor: CHLORIDE ION, GLUTAMIC ACID, Glutamate receptor, ...
Authors:Chaudhry, C, Mayer, M.L.
Deposit date:2009-02-02
Release date:2009-06-02
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.371 Å)
Cite:Stability of ligand-binding domain dimer assembly controls kainate receptor desensitization.
Embo J., 28, 2009
3G3F
DownloadVisualize
BU of 3g3f by Molmil
Crystal structure of the GluR6 ligand binding domain dimer with glutamate and NaCl at 1.38 Angstrom resolution
Descriptor: CHLORIDE ION, GLUTAMIC ACID, Glutamate receptor, ...
Authors:Chaudhry, C, Mayer, M.L.
Deposit date:2009-02-02
Release date:2009-06-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.377 Å)
Cite:Stability of ligand-binding domain dimer assembly controls kainate receptor desensitization.
Embo J., 28, 2009
4U21
DownloadVisualize
BU of 4u21 by Molmil
GluA2flip sLBD complexed with FW and (R,R)-2b crystal form E
Descriptor: 2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID, Glutamate receptor 2,Glutamate receptor 2, N,N'-[biphenyl-4,4'-diyldi(2R)propane-2,1-diyl]dipropane-2-sulfonamide
Authors:Chen, L, Gouaux, E.
Deposit date:2014-07-16
Release date:2014-08-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.3908 Å)
Cite:Structure and Dynamics of AMPA Receptor GluA2 in Resting, Pre-Open, and Desensitized States.
Cell, 158, 2014
6FAZ
DownloadVisualize
BU of 6faz by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with the positive allosteric modulator TDPAM01 at 1.4 A resolution.
Descriptor: 1,2-ETHANEDIOL, 6,6'-(Ethane-1,2-diyl)bis(4-methyl-3,4-dihydro-2H-1,2,4-benzothiadiazine 1,1-dioxide), ACETATE ION, ...
Authors:Nielsen, L, Laulumaa, S, Kastrup, J.S.
Deposit date:2017-12-18
Release date:2018-11-21
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Enhancing Action of Positive Allosteric Modulators through the Design of Dimeric Compounds.
J. Med. Chem., 61, 2018
6Q54
DownloadVisualize
BU of 6q54 by Molmil
Structure of GluA2 ligand-binding domain (S1S2J) in complex with the agonist (S)-2-Amino-3-(1-ethyl-4-hydroxy-1H-1,2,3-triazol-5-yl)propanoic acid at 1.4 A resolution
Descriptor: (2~{S})-2-azanyl-3-(3-ethyl-5-oxidanyl-1,2,3-triazol-4-yl)propanoic acid, CHLORIDE ION, CITRIC ACID, ...
Authors:Moellerud, S, Temperini, P, Kastrup, J.S.
Deposit date:2018-12-07
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Use of the 4-Hydroxytriazole Moiety as a Bioisosteric Tool in the Development of Ionotropic Glutamate Receptor Ligands.
J.Med.Chem., 62, 2019

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon