1HDD
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CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA INTERACTIONS
Descriptor:DNA (5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*TP*AP*C P*CP*TP*AP*A)-3'), DNA (5'-D(*AP*TP*TP*AP*GP*GP*TP*AP*AP*TP*TP*AP*CP*AP*TP*GP*G P*CP*AP*AP*A)-3'), PROTEIN (ENGRAILED HOMEODOMAIN)
Authors:Kissinger, C.R., Liu, B., Martin-Blanco, E., Kornberg, T.B., Pabo, C.O.
Deposit date:1991-09-16
Release date:1992-01-15
Last modified:2017-02-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions.
Cell(Cambridge,Mass.), 63, 1990
1HOM
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DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
Descriptor:ANTENNAPEDIA PROTEIN
Authors:Qian, Y.-Q., Billeter, M., Otting, G., Muller, M., Gehring, W.J., Wuthrich, K.
Deposit date:1991-10-08
Release date:1993-10-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Determination of the three-dimensional structure of the Antennapedia homeodomain from Drosophila in solution by 1H nuclear magnetic resonance spectroscopy.
J.Mol.Biol., 214, 1990
2HOA
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STRUCTURE DETERMINATION OF THE ANTP(C39->S) HOMEODOMAIN FROM NUCLEAR MAGNETIC RESONANCE DATA IN SOLUTION USING A NOVEL STRATEGY FOR THE STRUCTURE CALCULATION WITH THE PROGRAMS DIANA, CALIBA, HABAS AND GLOMSA
Descriptor:ANTENNAPEDIA PROTEIN
Authors:Guntert, P., Qian, Y.-Q., Otting, G., Muller, M., Gehring, W.J., Wuthrich, K.
Deposit date:1992-04-04
Release date:1993-10-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure determination of the Antp (C39----S) homeodomain from nuclear magnetic resonance data in solution using a novel strategy for the structure calculation with the programs DIANA, CALIBA, HABAS and GLOMSA.
J.Mol.Biol., 217, 1991
1AHD
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DETERMINATION OF THE NMR SOLUTION STRUCTURE OF AN ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX
Descriptor:DNA (5'-D(*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), Homeotic protein antennapedia
Authors:Billeter, M., Qian, Y.Q., Otting, G., Muller, M., Gehring, W.J., Wuthrich, K.
Deposit date:1993-04-02
Release date:1993-10-31
Last modified:2016-03-30
Method:SOLUTION NMR
Cite:Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex.
J.Mol.Biol., 234, 1993
1APL
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CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS
Descriptor:DNA (5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*CP*AP*TP*TP*TP*AP*C P*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*GP*TP*AP*AP*AP*TP*GP*AP*AP*TP*TP*A P*CP*AP*TP*G)-3'), PROTEIN (MAT-ALPHA2 HOMEODOMAIN)
Authors:Wolberger, C., Vershon, A.K., Liu, B., Johnson, A.D., Pabo, C.O.
Deposit date:1993-10-04
Release date:1993-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions.
Cell(Cambridge,Mass.), 67, 1991
1FTZ
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NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE OF THE FUSHI TARAZU HOMEODOMAIN FROM DROSOPHILA AND COMPARISON WITH THE ANTENNAPEDIA HOMEODOMAIN
Descriptor:FUSHI TARAZU PROTEIN
Authors:Qian, Y.Q., Furukubo-Tokunaga, K., Resendez-Perez, D., Muller, M., Gehring, W.J., Wuthrich, K.
Deposit date:1994-01-07
Release date:1994-05-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance solution structure of the fushi tarazu homeodomain from Drosophila and comparison with the Antennapedia homeodomain.
J.Mol.Biol., 238, 1994
1HDP
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SOLUTION STRUCTURE OF A POU-SPECIFIC HOMEODOMAIN: 3D-NMR STUDIES OF HUMAN B-CELL TRANSCRIPTION FACTOR OCT-2
Descriptor:OCT-2 POU HOMEODOMAIN
Authors:Sivaraja, M., Botfield, M.C., Mueller, M., Jancso, A., Weiss, M.A.
Deposit date:1994-03-08
Release date:1995-01-26
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of a POU-specific homeodomain: 3D-NMR studies of human B-cell transcription factor Oct-2.
Biochemistry, 33, 1994
1OCT
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CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULES
Descriptor:DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3'), DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3'), PROTEIN (OCT-1 POU DOMAIN)
Authors:Klemm, J.D., Rould, M.A., Aurora, R., Herr, W., Pabo, C.O.
Deposit date:1994-05-09
Release date:1994-08-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules.
Cell(Cambridge,Mass.), 77, 1994
1POG
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SOLUTION STRUCTURE OF THE OCT-1 POU-HOMEO DOMAIN DETERMINED BY NMR AND RESTRAINED MOLECULAR DYNAMICS
Descriptor:OCT-1 POU HOMEODOMAIN DNA-BINDING PROTEIN
Authors:Cox, M., Van Tilborg, P.J.A., De Laat, W., Boelens, R., Van Leeuwen, H.C., Van Der Vliet, P.C., Kaptein, R.
Deposit date:1994-10-12
Release date:1995-07-31
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the Oct-1 POU homeodomain determined by NMR and restrained molecular dynamics.
J.Biomol.NMR, 6, 1995
1OCP
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SOLUTION STRUCTURE OF OCT3 POU-HOMEODOMAIN
Descriptor:OCT-3
Authors:Morita, E.H., Hayashi, F., Shirakawa, M., Kyogoku, Y.
Deposit date:1995-02-21
Release date:1995-09-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the Oct-3 POU-Homeodomain in Solution, as Determined by Triple Resonance Heteronuclear Multidimensional NMR Spectroscopy
Protein Sci., 4, 1995
1FTT
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THYROID TRANSCRIPTION FACTOR 1 HOMEODOMAIN (RATTUS NORVEGICUS)
Descriptor:THYROID TRANSCRIPTION FACTOR 1 HOMEODOMAIN
Authors:Fogolari, F., Esposito, G., Damante, G., Formisano, S., Di Lauro, R., Viglino, P.
Deposit date:1995-10-03
Release date:1996-01-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Analysis of the solution structure of the homeodomain of rat thyroid transcription factor 1 by 1H-NMR spectroscopy and restrained molecular mechanics.
Eur.J.Biochem., 241, 1996
1YRN
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CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA
Descriptor:DNA (5'-D(*TP*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*TP*AP*TP*TP*AP*C P*AP*TP*CP*A)-3'), DNA (5'-D(*TP*AP*TP*GP*AP*TP*GP*TP*AP*AP*TP*AP*AP*AP*TP*TP*A P*CP*AP*TP*G)-3'), PROTEIN (MAT A1 HOMEODOMAIN), ...
Authors:Li, T., Stark, M.R., Johnson, A.D., Wolberger, C.
Deposit date:1995-11-02
Release date:1996-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the MATa1/MAT alpha 2 homeodomain heterodimer bound to DNA.
Science, 270, 1995
1FJL
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HOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA OLIGONUCLEOTIDE
Descriptor:PAIRED PROTEIN, DNA (5'-D(*AP*AP*TP*AP*AP*TP*CP*TP*GP*AP*TP*TP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*AP*AP*TP*CP*AP*GP*AP*TP*TP*AP*T)-3'), ...
Authors:Wilson, D.S., Guenther, B., Desplan, C., Kuriyan, J.
Deposit date:1995-12-17
Release date:1996-06-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:High resolution crystal structure of a paired (Pax) class cooperative homeodomain dimer on DNA.
Cell(Cambridge,Mass.), 82, 1995
1VND
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VND/NK-2 PROTEIN (HOMEODOMAIN), NMR
Descriptor:VND/NK-2 PROTEIN
Authors:Tsao, D.H.H., Gruschus, J.M., Wang, L.-H., Nirenberg, M., Ferretti, J.A.
Deposit date:1996-05-22
Release date:1996-11-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The three-dimensional solution structure of the NK-2 homeodomain from Drosophila.
J.Mol.Biol., 251, 1995
1AKH
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MAT A1/ALPHA2/DNA TERNARY COMPLEX
Descriptor:DNA (5'-D(*TP*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*C P*AP*TP*CP*A)-3'), DNA (5'-D(*TP*AP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*A P*CP*AP*TP*G)-3'), PROTEIN (MATING-TYPE PROTEIN A-1), ...
Authors:Li, T., Jin, Y., Vershon, A.K., Wolberger, C.
Deposit date:1997-05-19
Release date:1998-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the MATa1/MATalpha2 homeodomain heterodimer in complex with DNA containing an A-tract.
Nucleic Acids Res., 26, 1998
1AU7
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PIT-1 MUTANT/DNA COMPLEX
Descriptor:CONSENSUS DNA 25-MER, DNA (5'-D(*CP*TP*TP*CP*CP*TP*CP*AP*TP*GP*TP*AP*TP*AP*TP*AP*C P*AP*TP*GP*AP*GP* GP*A)-3'), PROTEIN PIT-1
Authors:Jacobson, E.M., Li, P., Leon-Del-Rio, A., Rosenfeld, M.G., Aggarwal, A.K.
Deposit date:1997-09-12
Release date:1998-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility.
Genes Dev., 11, 1997
1MNM
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YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
Descriptor:DNA (STE6 OPERATOR DNA), PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR), PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR)
Authors:Tan, S., Richmond, T.J.
Deposit date:1997-11-03
Release date:1998-03-18
Last modified:2017-02-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex.
Nature, 391, 1998
2HDD
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ENGRAILED HOMEODOMAIN Q50K VARIANT DNA COMPLEX
Descriptor:DNA (5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*C P*CP*GP*GP*A)-3'), DNA (5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*G P*CP*AP*AP*A)-3'), PROTEIN (ENGRAILED HOMEODOMAIN Q50K)
Authors:Tucker-Kellogg, L., Rould, M.A., Chambers, K.A., Ades, S.E., Sauer, R.T., Pabo, C.O.
Deposit date:1998-02-10
Release date:1998-05-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Engrailed (Gln50-->Lys) homeodomain-DNA complex at 1.9 A resolution: structural basis for enhanced affinity and altered specificity.
Structure, 5, 1997
1NK2
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VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, 20 STRUCTURES
Descriptor:DNA (5'-D(*TP*GP*TP*GP*TP*CP*AP*AP*GP*TP*GP*GP*CP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*GP*CP*CP*AP*CP*TP*TP*GP*AP*CP*AP*CP*A)-3'), HOMEOBOX PROTEIN VND
Authors:Gruschus, J.M., Tsao, D.H.H., Wang, L.-H., Nirenberg, M., Ferretti, J.A.
Deposit date:1998-05-06
Release date:1999-02-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity.
Biochemistry, 36, 1997
1NK3
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VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:DNA (5'-D(*TP*GP*TP*GP*TP*CP*AP*AP*GP*TP*GP*GP*CP*TP*GP*T)-3'), DNA (5'-D(*AP*CP*AP*GP*CP*CP*AP*CP*TP*TP*GP*AP*CP*AP*CP*A)-3'), HOMEOBOX PROTEIN VND
Authors:Gruschus, J.M., Tsao, D.H.H., Wang, L.-H., Nirenberg, M., Ferretti, J.A.
Deposit date:1998-05-06
Release date:1998-12-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity.
Biochemistry, 36, 1997
9ANT
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ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX
Descriptor:DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3'), ANTENNAPEDIA HOMEODOMAIN, ...
Authors:Fraenkel, E., Pabo, C.O.
Deposit date:1998-07-02
Release date:1998-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Comparison of X-ray and NMR structures for the Antennapedia homeodomain-DNA complex.
Nat.Struct.Biol., 5, 1998
3HDD
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ENGRAILED HOMEODOMAIN DNA COMPLEX
Descriptor:5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*TP*AP*CP*CP*TP*AP*A)-3', 5'-D(*AP*TP*TP*AP*GP*GP*TP*AP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3', ENGRAILED HOMEODOMAIN
Authors:Fraenkel, E., Rould, M.A., Chambers, K.A., Pabo, C.O.
Deposit date:1998-07-13
Release date:1998-11-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Engrailed homeodomain-DNA complex at 2.2 A resolution: a detailed view of the interface and comparison with other engrailed structures.
J.Mol.Biol., 284, 1998
1BW5
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THE NMR SOLUTION STRUCTURE OF THE HOMEODOMAIN OF THE RAT INSULIN GENE ENHANCER PROTEIN ISL-1, 50 STRUCTURES
Descriptor:INSULIN GENE ENHANCER PROTEIN ISL-1
Authors:Ippel, J.H., Larsson, G., Behravan, G., Zdunek, J., Lundqvist, M., Schleucher, J., Lycksell, P.-O., Wijmenga, S.S.
Deposit date:1998-09-29
Release date:1999-06-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the homeodomain of the rat insulin-gene enhancer protein isl-1. Comparison with other homeodomains.
J.Mol.Biol., 288, 1999
1B72
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PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX
Descriptor:DNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3'), PROTEIN (HOMEOBOX PROTEIN HOX-B1), ...
Authors:Piper, D.E., Batchelor, A.H., Chang, C.-P., Cleary, M.L., Wolberger, C.
Deposit date:1999-01-27
Release date:1999-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of a HoxB1-Pbx1 heterodimer bound to DNA: role of the hexapeptide and a fourth homeodomain helix in complex formation.
Cell(Cambridge,Mass.), 96, 1999
1B8I
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STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
Descriptor:DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3'), DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3'), PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV), ...
Authors:Passner, J.M., Ryoo, H.-D., Shen, L., Mann, R.S., Aggarwal, A.K.
Deposit date:1999-02-01
Release date:1999-04-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex.
Nature, 397, 1999
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